Literature DB >> 17350996

Quantitative vibrational dynamics of iron in carbonyl porphyrins.

Bogdan M Leu1, Nathan J Silvernail, Marek Z Zgierski, Graeme R A Wyllie, Mary K Ellison, W Robert Scheidt, Jiyong Zhao, Wolfgang Sturhahn, E Ercan Alp, J Timothy Sage.   

Abstract

We use nuclear resonance vibrational spectroscopy and computational predictions based on density functional theory (DFT) to explore the vibrational dynamics of (57)Fe in porphyrins that mimic the active sites of histidine-ligated heme proteins complexed with carbon monoxide. Nuclear resonance vibrational spectroscopy yields the complete vibrational spectrum of a Mössbauer isotope, and provides a valuable probe that is not only selective for protein active sites but quantifies the mean-squared amplitude and direction of the motion of the probe nucleus, in addition to vibrational frequencies. Quantitative comparison of the experimental results with DFT calculations provides a detailed, rigorous test of the vibrational predictions, which in turn provide a reliable description of the observed vibrational features. In addition to the well-studied stretching vibration of the Fe-CO bond, vibrations involving the Fe-imidazole bond, and the Fe-N(pyr) bonds to the pyrrole nitrogens of the porphyrin contribute prominently to the observed experimental signal. All of these frequencies show structural sensitivity to the corresponding bond lengths, but previous studies have failed to identify the latter vibrations, presumably because the coupling to the electronic excitation is too small in resonance Raman measurements. We also observe the FeCO bending vibrations, which are not Raman active for these unhindered model compounds. The observed Fe amplitude is strongly inconsistent with three-body oscillator descriptions of the FeCO fragment, but agrees quantitatively with DFT predictions. Over the past decade, quantum chemical calculations have suggested revised estimates of the importance of steric distortion of the bound CO in preventing poisoning of heme proteins by carbon monoxide. Quantitative agreement with the predicted frequency, amplitude, and direction of Fe motion for the FeCO bending vibrations provides direct experimental support for the quantum chemical description of the energetics of the FeCO unit.

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Year:  2007        PMID: 17350996      PMCID: PMC1868970          DOI: 10.1529/biophysj.106.093773

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  93 in total

1.  Structure of the CO sensing transcription activator CooA.

Authors:  W N Lanzilotta; D J Schuller; M V Thorsteinsson; R L Kerby; G P Roberts; T L Poulos
Journal:  Nat Struct Biol       Date:  2000-10

2.  Iron-histidine resonance Raman band of deoxyheme proteins: effects of anharmonic coupling and glass-liquid phase transition.

Authors:  A Bitler; S S Stavrov
Journal:  Biophys J       Date:  1999-11       Impact factor: 4.033

3.  CO-dependent activity-controlling mechanism of heme-containing CO-sensor protein, neuronal PAS domain protein 2.

Authors:  Takeshi Uchida; Emiko Sato; Akira Sato; Ikuko Sagami; Toru Shimizu; Teizo Kitagawa
Journal:  J Biol Chem       Date:  2005-03-29       Impact factor: 5.157

4.  Heme carbonyls: environmental effects on nu(C-O) and Fe-C/C-O bond length correlations.

Authors:  Nathan J Silvernail; Arne Roth; Charles E Schulz; Bruce C Noll; W Robert Scheidt
Journal:  J Am Chem Soc       Date:  2005-10-19       Impact factor: 15.419

Review 5.  Infrared methods for study of hemoglobin reactions and structures.

Authors:  A Dong; W S Caughey
Journal:  Methods Enzymol       Date:  1994       Impact factor: 1.600

6.  The electronic and vibrational structures of iron-oxo porphyrin with a methoxide or cysteinate axial ligand.

Authors:  T Ohta; K Matsuura; K Yoshizawa; I Morishima
Journal:  J Inorg Biochem       Date:  2000-11       Impact factor: 4.155

7.  Electronic configuration of high-spin imidazole-ligated iron(II) octaethylporphyrinates.

Authors:  Chuanjiang Hu; Jin An; Bruce C Noll; Charles E Schulz; W Robert Scheidt
Journal:  Inorg Chem       Date:  2006-05-15       Impact factor: 5.165

8.  Direct determination of the complete set of iron normal modes in a porphyrin-imidazole model for carbonmonoxy-heme proteins: [Fe(TPP)(CO)(1-MeIm)].

Authors:  Brajesh K Rai; Stephen M Durbin; Earl W Prohofsky; J Timothy Sage; Mary K Ellison; Arne Roth; W Robert Scheidt; Wolfgang Sturhahn; E Ercan Alp
Journal:  J Am Chem Soc       Date:  2003-06-11       Impact factor: 15.419

9.  Cytochrome a3 structure in carbon monoxide-bound cytochrome oxidase.

Authors:  P V Argade; Y C Ching; D L Rousseau
Journal:  Science       Date:  1984-07-20       Impact factor: 47.728

10.  Rebinding and relaxation in the myoglobin pocket.

Authors:  A Ansari; J Berendzen; D Braunstein; B R Cowen; H Frauenfelder; M K Hong; I E Iben; J B Johnson; P Ormos; T B Sauke
Journal:  Biophys Chem       Date:  1987-05-09       Impact factor: 2.352

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  20 in total

1.  Nuclear resonance vibrational spectroscopy applied to [Fe(OEP)(NO)]: the vibrational assignments of five-coordinate ferrous heme-nitrosyls and implications for electronic structure.

Authors:  Nicolai Lehnert; Mary Grace I Galinato; Florian Paulat; George B Richter-Addo; Wolfgang Sturhahn; Nan Xu; Jiyong Zhao
Journal:  Inorg Chem       Date:  2010-05-03       Impact factor: 5.165

2.  Nuclear resonance vibrational spectra of five-coordinate imidazole-ligated iron(II) porphyrinates.

Authors:  Chuanjiang Hu; Alexander Barabanschikov; Mary K Ellison; Jiyong Zhao; E Ercan Alp; Wolfgang Sturhahn; Marek Z Zgierski; J Timothy Sage; W Robert Scheidt
Journal:  Inorg Chem       Date:  2012-01-13       Impact factor: 5.165

3.  New perspectives on iron-ligand vibrations of oxyheme complexes.

Authors:  Jianfeng Li; Qian Peng; Alexander Barabanschikov; Jeffrey W Pavlik; E Ercan Alp; Wolfgang Sturhahn; Jiyong Zhao; Charles E Schulz; J Timothy Sage; W Robert Scheidt
Journal:  Chemistry       Date:  2011-08-29       Impact factor: 5.236

4.  Spectroscopic identification of reactive porphyrin motions.

Authors:  Alexander Barabanschikov; Alexander Demidov; Minoru Kubo; Paul M Champion; J Timothy Sage; Jiyong Zhao; Wolfgang Sturhahn; E Ercan Alp
Journal:  J Chem Phys       Date:  2011-07-07       Impact factor: 3.488

5.  Probing vibrational anisotropy with nuclear resonance vibrational spectroscopy.

Authors:  Jeffrey W Pavlik; Alexander Barabanschikov; Allen G Oliver; E Ercan Alp; Wolfgang Sturhahn; Jiyong Zhao; J Timothy Sage; W Robert Scheidt
Journal:  Angew Chem Int Ed Engl       Date:  2010-06-14       Impact factor: 15.336

6.  Oriented single-crystal nuclear resonance vibrational spectroscopy of [Fe(TPP)(MI)(NO)]: quantitative assessment of the trans effect of NO.

Authors:  Nicolai Lehnert; J Timothy Sage; Nathan Silvernail; W Robert Scheidt; E Ercan Alp; Wolfgang Sturhahn; Jiyong Zhao
Journal:  Inorg Chem       Date:  2010-08-02       Impact factor: 5.165

Review 7.  What Can Be Learned from Nuclear Resonance Vibrational Spectroscopy: Vibrational Dynamics and Hemes.

Authors:  W Robert Scheidt; Jianfeng Li; J Timothy Sage
Journal:  Chem Rev       Date:  2017-09-18       Impact factor: 60.622

8.  Quantitative vibrational dynamics of the metal site in a tin porphyrin: an IR, NRVS, and DFT study.

Authors:  Bogdan M Leu; Marek Z Zgierski; Christian Bischoff; Ming Li; Michael Y Hu; Jiyong Zhao; Steve W Martin; Esen Ercan Alp; W Robert Scheidt
Journal:  Inorg Chem       Date:  2013-08-20       Impact factor: 5.165

9.  3D Motions of Iron in Six-Coordinate {FeNO}(7) Hemes by Nuclear Resonance Vibration Spectroscopy.

Authors:  Qian Peng; Jeffrey W Pavlik; Nathan J Silvernail; E Ercan Alp; Michael Y Hu; Jiyong Zhao; J Timothy Sage; W Robert Scheidt
Journal:  Chemistry       Date:  2016-03-21       Impact factor: 5.236

10.  Reversible NO motion in crystalline [Fe(Porph)(1-MeIm)(NO)] derivatives.

Authors:  Nathan J Silvernail; Jeffrey W Pavlik; Bruce C Noll; Charles E Schulz; W Robert Scheidt
Journal:  Inorg Chem       Date:  2008-01-04       Impact factor: 5.165

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