Literature DB >> 16852008

Small temperature dependence of the kinetic isotope effect for the hydride transfer reaction catalyzed by Escherichia coli dihydrofolate reductase.

Jingzhi Pu1, Shuhua Ma, Jiali Gao, Donald G Truhlar.   

Abstract

The H/D primary kinetic isotope effect (KIE) for the hydride transfer reaction catalyzed by Escherichia coli dihydrofolate reductase (ecDHFR) is calculated as a function of temperature employing ensemble-averaged variational transition-state theory with multidimensional tunneling. The calculated KIEs display only a small temperature dependence over the temperature range of 5 to 45 degrees C. We identify two key features that contribute to canceling most of the temperature dependence of the KIE that would be expected on the basis of simpler models. Related issues such as the isotope effects on Arrhenius preexponential factors, large differences between free energies of activation and Arrhenius activation energy, and fluctuations of effective barriers are also discussed.

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Year:  2005        PMID: 16852008      PMCID: PMC4476250          DOI: 10.1021/jp051184c

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  37 in total

1.  A measure of conformational entropy change during thermal protein unfolding using neutron spectroscopy.

Authors:  Jörg Fitter
Journal:  Biophys J       Date:  2003-06       Impact factor: 4.033

2.  Hydride transfer catalyzed by xylose isomerase: mechanism and quantum effects.

Authors:  Mireia Garcia-Viloca; Cristóbal Alhambra; Donald G Truhlar; Jiali Gao
Journal:  J Comput Chem       Date:  2003-01-30       Impact factor: 3.376

3.  Double hydrogen tunneling revisited: the breakdown of experimental tunneling criteria.

Authors:  Christofer S Tautermann; Markus J Loferer; Andreas F Voegele; Klaus R Liedl
Journal:  J Chem Phys       Date:  2004-06-22       Impact factor: 3.488

4.  Tunneling and coupled motion in the Escherichia coli dihydrofolate reductase catalysis.

Authors:  R Steven Sikorski; Lin Wang; Kelli A Markham; P T Ravi Rajagopalan; Stephen J Benkovic; Amnon Kohen
Journal:  J Am Chem Soc       Date:  2004-04-21       Impact factor: 15.419

5.  Nature of hydrogen transfer in soybean lipoxygenase 1: separation of primary and secondary isotope effects.

Authors:  K W Rickert; J P Klinman
Journal:  Biochemistry       Date:  1999-09-21       Impact factor: 3.162

Review 6.  Hydrogen tunneling in biology.

Authors:  A Kohen; J P Klinman
Journal:  Chem Biol       Date:  1999-07

7.  Hydride transfer during catalysis by dihydrofolate reductase from Thermotoga maritima.

Authors:  Giovanni Maglia; Masood H Javed; Rudolf K Allemann
Journal:  Biochem J       Date:  2003-09-01       Impact factor: 3.857

8.  Unusually large isotope effect for the reaction of aromatic amine dehydrogenase. A common feature of quinoproteins?

Authors:  Y L Hyun; V L Davidson
Journal:  Biochim Biophys Acta       Date:  1995-09-06

9.  Reaction-path energetics and kinetics of the hydride transfer reaction catalyzed by dihydrofolate reductase.

Authors:  Mireia Garcia-Viloca; Donald G Truhlar; Jiali Gao
Journal:  Biochemistry       Date:  2003-11-25       Impact factor: 3.162

10.  Evidence that both protium and deuterium undergo significant tunneling in the reaction catalyzed by bovine serum amine oxidase.

Authors:  K L Grant; J P Klinman
Journal:  Biochemistry       Date:  1989-08-08       Impact factor: 3.162

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  40 in total

1.  Good vibrations in enzyme-catalysed reactions.

Authors:  Sam Hay; Nigel S Scrutton
Journal:  Nat Chem       Date:  2012-01-29       Impact factor: 24.427

2.  Nonperfect synchronization of reaction center rehybridization in the transition state of the hydride transfer catalyzed by dihydrofolate reductase.

Authors:  Jingzhi Pu; Shuhua Ma; Mireia Garcia-Viloca; Jiali Gao; Donald G Truhlar; Amnon Kohen
Journal:  J Am Chem Soc       Date:  2005-10-26       Impact factor: 15.419

3.  Linking protein structure and dynamics to catalysis: the role of hydrogen tunnelling.

Authors:  Judith P Klinman
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-08-29       Impact factor: 6.237

Review 4.  Mechanisms and free energies of enzymatic reactions.

Authors:  Jiali Gao; Shuhua Ma; Dan T Major; Kwangho Nam; Jingzhi Pu; Donald G Truhlar
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

Review 5.  Multidimensional tunneling, recrossing, and the transmission coefficient for enzymatic reactions.

Authors:  Jingzhi Pu; Jiali Gao; Donald G Truhlar
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

6.  Effects of a distal mutation on active site chemistry.

Authors:  Lin Wang; Scott Tharp; Tzvia Selzer; Stephen J Benkovic; Amnon Kohen
Journal:  Biochemistry       Date:  2006-02-07       Impact factor: 3.162

7.  Coordinated effects of distal mutations on environmentally coupled tunneling in dihydrofolate reductase.

Authors:  Lin Wang; Nina M Goodey; Stephen J Benkovic; Amnon Kohen
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-10       Impact factor: 11.205

8.  An Analysis of All the Relevant Facts and Arguments Indicates that Enzyme Catalysis Does Not Involve Large Contributions from Nuclear Tunneling.

Authors:  Shina C L Kamerlin; Arieh Warshel
Journal:  J Phys Org Chem       Date:  2010-07       Impact factor: 2.391

9.  Unraveling the role of protein dynamics in dihydrofolate reductase catalysis.

Authors:  Louis Y P Luk; J Javier Ruiz-Pernía; William M Dawson; Maite Roca; E Joel Loveridge; David R Glowacki; Jeremy N Harvey; Adrian J Mulholland; Iñaki Tuñón; Vicent Moliner; Rudolf K Allemann
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-24       Impact factor: 11.205

10.  Benchmarking Quantum Mechanics/Molecular Mechanics (QM/MM) Methods on the Thymidylate Synthase-Catalyzed Hydride Transfer.

Authors:  Katarzyna Świderek; Kemel Arafet; Amnon Kohen; Vicent Moliner
Journal:  J Chem Theory Comput       Date:  2017-02-22       Impact factor: 6.006

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