Literature DB >> 12765545

Hydride transfer during catalysis by dihydrofolate reductase from Thermotoga maritima.

Giovanni Maglia1, Masood H Javed, Rudolf K Allemann.   

Abstract

DHFR (dihydrofolate reductase) catalyses the metabolically important reduction of 7,8-dihydrofolate by NADPH. DHFR from the hyperthermophilic bacterium Thermotoga maritima (TmDHFR), which shares similarity with DHFR from Escherichia coli, has previously been characterized structurally. Its tertiary structure is similar to that of DHFR from E. coli but it is the only DHFR characterized so far that relies on dimerization for stability. The midpoint of the thermal unfolding of TmDHFR was at approx. 83 degrees C, which was 30 degrees C higher than the melting temperature of DHFR from E. coli. The turnover and the hydride-transfer rates in the kinetic scheme of TmDHFR were derived from measurements of the steady-state and pre-steady-state kinetics using absorbance and stopped-flow fluorescence spectroscopy. The rate constant for hydride transfer was found to depend strongly on the temperature and the pH of the solution. Hydride transfer was slow (0.14 s(-1) at 25 degrees C) and at least partially rate limiting at low temperatures but increased dramatically with temperature. At 80 degrees C the hydride-transfer rate of TmDHFR was 20 times lower than that observed for the E. coli enzyme at its physiological temperature. Hydride transfer depended on ionization of a single group in the active site with a p K(a) of 6.0. While at 30 degrees C, turnover of substrate by TmDHFR was almost two orders of magnitude slower than by DHFR from E. coli; the steady-state rates of the two enzymes differed only 8-fold at their respective working temperatures.

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Year:  2003        PMID: 12765545      PMCID: PMC1223599          DOI: 10.1042/BJ20030412

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  29 in total

1.  Dihydrofolate reductase from Thermotoga maritima.

Authors:  T Dams; R Jaenicke
Journal:  Methods Enzymol       Date:  2001       Impact factor: 1.600

2.  Do ultrastable proteins from hyperthermophiles have high or low conformational rigidity?

Authors:  R Jaenicke
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-28       Impact factor: 11.205

3.  Multistate equilibrium unfolding of Escherichia coli dihydrofolate reductase: thermodynamic and spectroscopic description of the native, intermediate, and unfolded ensembles.

Authors:  R M Ionescu; V F Smith; J C O'Neill; C R Matthews
Journal:  Biochemistry       Date:  2000-08-08       Impact factor: 3.162

Review 4.  Protein stability and molecular adaptation to extreme conditions.

Authors:  R Jaenicke
Journal:  Eur J Biochem       Date:  1991-12-18

5.  The crystal structure of dihydrofolate reductase from Thermotoga maritima: molecular features of thermostability.

Authors:  T Dams; G Auerbach; G Bader; U Jacob; T Ploom; R Huber; R Jaenicke
Journal:  J Mol Biol       Date:  2000-03-31       Impact factor: 5.469

6.  Stability and folding of dihydrofolate reductase from the hyperthermophilic bacterium Thermotoga maritima.

Authors:  T Dams; R Jaenicke
Journal:  Biochemistry       Date:  1999-07-13       Impact factor: 3.162

7.  13C and 15N nuclear magnetic resonance evidence that the active site carboxyl group of dihydrofolate reductase is not involved in the relay of a proton to substrate.

Authors:  R L Blakley; J R Appleman; J H Freisheim; M J Jablonsky
Journal:  Arch Biochem Biophys       Date:  1993-11-01       Impact factor: 4.013

8.  Probing the functional role of phenylalanine-31 of Escherichia coli dihydrofolate reductase by site-directed mutagenesis.

Authors:  J T Chen; K Taira; C P Tu; S J Benkovic
Journal:  Biochemistry       Date:  1987-06-30       Impact factor: 3.162

9.  13C and 15N nuclear magnetic resonance evidence of the ionization state of substrates bound to bovine dihydrofolate reductase.

Authors:  B S Selinsky; M E Perlman; R E London; C J Unkefer; J Mitchell; R L Blakley
Journal:  Biochemistry       Date:  1990-02-06       Impact factor: 3.162

10.  Dissociation constants for dihydrofolic acid and dihydrobiopterin and implications for mechanistic models for dihydrofolate reductase.

Authors:  G Maharaj; B S Selinsky; J R Appleman; M Perlman; R E London; R L Blakley
Journal:  Biochemistry       Date:  1990-05-15       Impact factor: 3.162

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  19 in total

1.  Evidence that a 'dynamic knockout' in Escherichia coli dihydrofolate reductase does not affect the chemical step of catalysis.

Authors:  E Joel Loveridge; Enas M Behiry; Jiannan Guo; Rudolf K Allemann
Journal:  Nat Chem       Date:  2012-03-11       Impact factor: 24.427

Review 2.  Multidimensional tunneling, recrossing, and the transmission coefficient for enzymatic reactions.

Authors:  Jingzhi Pu; Jiali Gao; Donald G Truhlar
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

3.  Small temperature dependence of the kinetic isotope effect for the hydride transfer reaction catalyzed by Escherichia coli dihydrofolate reductase.

Authors:  Jingzhi Pu; Shuhua Ma; Jiali Gao; Donald G Truhlar
Journal:  J Phys Chem B       Date:  2005-05-12       Impact factor: 2.991

4.  Effects of a distal mutation on active site chemistry.

Authors:  Lin Wang; Scott Tharp; Tzvia Selzer; Stephen J Benkovic; Amnon Kohen
Journal:  Biochemistry       Date:  2006-02-07       Impact factor: 3.162

5.  Fluorescent biphenyl derivatives of phenylalanine suitable for protein modification.

Authors:  Shengxi Chen; Nour Eddine Fahmi; Chandrabali Bhattacharya; Lin Wang; Yuguang Jin; Stephen J Benkovic; Sidney M Hecht
Journal:  Biochemistry       Date:  2013-11-11       Impact factor: 3.162

6.  Protein motions during catalysis by dihydrofolate reductases.

Authors:  Rudolf K Allemann; Rhiannon M Evans; Lai-hock Tey; Giovanni Maglia; Jiayun Pang; Robert Rodriguez; Paul J Shrimpton; Richard S Swanwick
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-08-29       Impact factor: 6.237

Review 7.  Perspective: Defining and quantifying the role of dynamics in enzyme catalysis.

Authors:  Arieh Warshel; Ram Prasad Bora
Journal:  J Chem Phys       Date:  2016-05-14       Impact factor: 3.488

8.  Cloning and characterization of dihydrofolate reductase from a facultative alkaliphilic and halotolerant bacillus strain.

Authors:  Lars Redecke; Maria A Brehm; Reinhard Bredehorst
Journal:  Extremophiles       Date:  2006-10-05       Impact factor: 2.395

9.  Two parallel pathways in the kinetic sequence of the dihydrofolate reductase from Mycobacterium tuberculosis.

Authors:  Clarissa M Czekster; An Vandemeulebroucke; John S Blanchard
Journal:  Biochemistry       Date:  2011-07-22       Impact factor: 3.162

Review 10.  At the dawn of the 21st century: Is dynamics the missing link for understanding enzyme catalysis?

Authors:  Shina C L Kamerlin; Arieh Warshel
Journal:  Proteins       Date:  2010-05-01
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