Literature DB >> 16895322

Multidimensional tunneling, recrossing, and the transmission coefficient for enzymatic reactions.

Jingzhi Pu1, Jiali Gao, Donald G Truhlar.   

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Year:  2006        PMID: 16895322      PMCID: PMC4478620          DOI: 10.1021/cr050308e

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   60.622


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  198 in total

Review 1.  Binding energy, specificity, and enzymic catalysis: the circe effect.

Authors:  W P Jencks
Journal:  Adv Enzymol Relat Areas Mol Biol       Date:  1975

2.  Hydride transfer catalyzed by xylose isomerase: mechanism and quantum effects.

Authors:  Mireia Garcia-Viloca; Cristóbal Alhambra; Donald G Truhlar; Jiali Gao
Journal:  J Comput Chem       Date:  2003-01-30       Impact factor: 3.376

3.  Role of protein dynamics in reaction rate enhancement by enzymes.

Authors:  Pratul K Agarwal
Journal:  J Am Chem Soc       Date:  2005-11-02       Impact factor: 15.419

4.  Reliable ab initio calculation of a chemical reaction rate and a kinetic isotope effect: H + H(2) and H + H(2).

Authors:  B C Garrett; D G Truhlar
Journal:  Proc Natl Acad Sci U S A       Date:  1979-10       Impact factor: 11.205

5.  Probes of hydrogen tunneling with horse liver alcohol dehydrogenase at subzero temperatures.

Authors:  S Tsai ; J P Klinman
Journal:  Biochemistry       Date:  2001-02-20       Impact factor: 3.162

6.  From force fields to dynamics: classical and quantal paths.

Authors:  D G Truhlar; M S Gordon
Journal:  Science       Date:  1990-08-03       Impact factor: 47.728

7.  Tunneling in ligand binding to heme proteins.

Authors:  N Alberding; R H Austin; K W Beeson; S S Chan; L Eisenstein; H Frauenfelder; T M Nordlund
Journal:  Science       Date:  1976-06-04       Impact factor: 47.728

8.  Alpha-secondary tritium kinetic isotope effects indicate hydrogen tunneling and coupled motion occur in the oxidation of L-malate by NAD-malic enzyme.

Authors:  W E Karsten; C C Hwang; P F Cook
Journal:  Biochemistry       Date:  1999-04-06       Impact factor: 3.162

9.  Boundary conditions for the Swain-Schaad relationship as a criterion for hydrogen tunneling.

Authors:  Amnon Kohen; Jan H Jensen
Journal:  J Am Chem Soc       Date:  2002-04-17       Impact factor: 15.419

10.  Evidence that both protium and deuterium undergo significant tunneling in the reaction catalyzed by bovine serum amine oxidase.

Authors:  K L Grant; J P Klinman
Journal:  Biochemistry       Date:  1989-08-08       Impact factor: 3.162

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  83 in total

1.  Probing quantum and dynamic effects in concerted proton-electron transfer reactions of phenol-base compounds.

Authors:  Todd F Markle; Adam L Tenderholt; James M Mayer
Journal:  J Phys Chem B       Date:  2011-12-23       Impact factor: 2.991

2.  Taking Ockham's razor to enzyme dynamics and catalysis.

Authors:  David R Glowacki; Jeremy N Harvey; Adrian J Mulholland
Journal:  Nat Chem       Date:  2012-01-29       Impact factor: 24.427

3.  Elusive transition state of alcohol dehydrogenase unveiled.

Authors:  Daniel Roston; Amnon Kohen
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-10       Impact factor: 11.205

Review 4.  Coupled motions in enzyme catalysis.

Authors:  Vishal C Nashine; Sharon Hammes-Schiffer; Stephen J Benkovic
Journal:  Curr Opin Chem Biol       Date:  2010-08-20       Impact factor: 8.822

Review 5.  Mechanisms and free energies of enzymatic reactions.

Authors:  Jiali Gao; Shuhua Ma; Dan T Major; Kwangho Nam; Jingzhi Pu; Donald G Truhlar
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

6.  Coordinated effects of distal mutations on environmentally coupled tunneling in dihydrofolate reductase.

Authors:  Lin Wang; Nina M Goodey; Stephen J Benkovic; Amnon Kohen
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-10       Impact factor: 11.205

7.  A remote mutation affects the hydride transfer by disrupting concerted protein motions in thymidylate synthase.

Authors:  Zhen Wang; Thelma Abeysinghe; Janet S Finer-Moore; Robert M Stroud; Amnon Kohen
Journal:  J Am Chem Soc       Date:  2012-10-15       Impact factor: 15.419

8.  The general base in the thymidylate synthase catalyzed proton abstraction.

Authors:  Ananda K Ghosh; Zahidul Islam; Jonathan Krueger; Thelma Abeysinghe; Amnon Kohen
Journal:  Phys Chem Chem Phys       Date:  2015-12-14       Impact factor: 3.676

9.  The Third Dimension of a More O'Ferrall-Jencks Diagram for Hydrogen Atom Transfer in the Isoelectronic Hydrogen Exchange Reactions of (PhX)(2)H(•) with X = O, NH, and CH(2).

Authors:  Alessandro Cembran; Makenzie R Provorse; Changwei Wang; Wei Wu; Jiali Gao
Journal:  J Chem Theory Comput       Date:  2012-09-04       Impact factor: 6.006

Review 10.  Catalytic efficiency of enzymes: a theoretical analysis.

Authors:  Sharon Hammes-Schiffer
Journal:  Biochemistry       Date:  2012-12-20       Impact factor: 3.162

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