Literature DB >> 16704267

1H NMR study of the magnetic properties and electronic structure of the hydroxide complex of substrate-bound heme oxygenase from Neisseria meningitidis: influence of the axial water deprotonation on the distal H-bond network.

Li-Hua Ma1, Yangzhong Liu, Xuhang Zhang, Tadashi Yoshida, Gerd N La Mar.   

Abstract

The substrate and active site residues of the low-spin hydroxide complex of the protohemin complex of Neisseria meningitidis heme oxygenase (NmHO) have been assigned by saturation transfer between the hydroxide and previously characterized aquo complex. The available dipolar shifts allowed the quantitation of both the orientation and anisotropy of the paramagnetic susceptibility tensor. The resulting positive sign, and reduced magnitude of the axial anisotropy relative to the cyanide complex, dictate that the orbital ground state is the conventional "d(pi)" (d(2)(xy)(d(xz), d(yz))(3)); and not the unusual "d(xy)" (d(2)(xz)d(2)(yz)d(xy)) orbital ground state reported for the hydroxide complex of the homologous heme oxygenase (HO) from Pseudomonas aeruginosa (Caignan, G.; Deshmukh, R.; Zeng, Y.; Wilks, A.; Bunce, R. A.; Rivera, M. J. Am. Chem. Soc. 2003, 125, 11842-11852) and proposed as a signature of the HO distal cavity. The conservation of slow labile proton exchange with solvent from pH 7.0 to 10.8 confirms the extraordinary dynamic stability of NmHO complexes. Comparison of the diamagnetic contribution to the labile proton chemical shifts in the aquo and hydroxide complexes reveals strongly conserved bond strengths in the distal H-bond network, with the exception of the distal His53 N(epsilon)(1)H. The iron-ligated water is linked to His53 primarily by a pair of nonligated, ordered water molecules that transmit the conversion of the ligated H-bond donor (H(2)O) to a H-bond acceptor (OH(-)), thereby increasing the H-bond donor strength of the His53 side chain.

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Year:  2006        PMID: 16704267      PMCID: PMC2566968          DOI: 10.1021/ja0584626

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  45 in total

1.  Solution 1H NMR of the active site of substrate-bound, cyanide-inhibited human heme oxygenase. comparison to the crystal structure of the water-ligated form.

Authors:  G N La Mar; A Asokan; B Espiritu; D C Yeh; K Auclair; P R Ortiz De Montellano
Journal:  J Biol Chem       Date:  2001-01-31       Impact factor: 5.157

Review 2.  Heme oxygenase: evolution, structure, and mechanism.

Authors:  Angela Wilks
Journal:  Antioxid Redox Signal       Date:  2002-08       Impact factor: 8.401

3.  Homologues of neisserial heme oxygenase in gram-negative bacteria: degradation of heme by the product of the pigA gene of Pseudomonas aeruginosa.

Authors:  M Ratliff; W Zhu; R Deshmukh; A Wilks; I Stojiljkovic
Journal:  J Bacteriol       Date:  2001-11       Impact factor: 3.490

4.  Crystal structure of heme oxygenase from the gram-negative pathogen Neisseria meningitidis and a comparison with mammalian heme oxygenase-1.

Authors:  D J Schuller; W Zhu; I Stojiljkovic; A Wilks; T L Poulos
Journal:  Biochemistry       Date:  2001-09-25       Impact factor: 3.162

5.  Degradation of heme in gram-negative bacteria: the product of the hemO gene of Neisseriae is a heme oxygenase.

Authors:  W Zhu; A Wilks; I Stojiljkovic
Journal:  J Bacteriol       Date:  2000-12       Impact factor: 3.490

6.  Catalytic mechanism of heme oxygenase through EPR and ENDOR of cryoreduced oxy-heme oxygenase and its Asp 140 mutants.

Authors:  Roman Davydov; Viktoria Kofman; Hiroshi Fujii; Tadashi Yoshida; Masao Ikeda-Saito; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2002-02-27       Impact factor: 15.419

7.  Solution 1H NMR characterization of the distal H-bond network and the effective axial field in the resting-state, high-spin ferric, substrate-bound complex of heme oxygenase from N. meningitidis.

Authors:  Yangzhong Liu; Xuhong Zhang; Tadashi Yoshida; Gerd N La Mar
Journal:  J Am Chem Soc       Date:  2005-05-04       Impact factor: 15.419

8.  Models of the low-spin iron(III) hydroperoxide intermediate of heme oxygenase: magnetic resonance evidence for thermodynamic stabilization of the d(xy) electronic state at ambient temperatures.

Authors:  Mario Rivera; Gregori A Caignan; Andrei V Astashkin; Arnold M Raitsimring; Tatjana Kh Shokhireva; F Ann Walker
Journal:  J Am Chem Soc       Date:  2002-05-29       Impact factor: 15.419

9.  Crystal structure of rat heme oxygenase-1 in complex with heme bound to azide. Implication for regiospecific hydroxylation of heme at the alpha-meso carbon.

Authors:  Masakazu Sugishima; Hiroshi Sakamoto; Yuichiro Higashimoto; Yoshiaki Omata; Shunsuke Hayashi; Masato Noguchi; Keiichi Fukuyama
Journal:  J Biol Chem       Date:  2002-09-15       Impact factor: 5.157

10.  Solution NMR characterization of an unusual distal H-bond network in the active site of the cyanide-inhibited, human heme oxygenase complex of the symmetric substrate, 2,4-dimethyldeuterohemin.

Authors:  Yiming Li; Ray T Syvitski; Karine Auclair; Angela Wilks; Paul R Ortiz De Montellano; Gerd N La Mar
Journal:  J Biol Chem       Date:  2002-06-17       Impact factor: 5.157

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  7 in total

1.  Electronic properties of the highly ruffled heme bound to the heme degrading enzyme IsdI.

Authors:  Shin-ichi J Takayama; Georgia Ukpabi; Michael E P Murphy; A Grant Mauk
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-25       Impact factor: 11.205

2.  Solution 1H NMR characterization of substrate-free C. diphtheriae heme oxygenase: pertinence for determining magnetic axes in paramagnetic substrate complexes.

Authors:  Zhenming Du; Masaki Unno; Toshitaka Matsui; Masao Ikeda-Saito; Gerd N La Mar
Journal:  J Inorg Biochem       Date:  2010-07-01       Impact factor: 4.155

3.  Distinct reaction pathways followed upon reduction of oxy-heme oxygenase and oxy-myoglobin as characterized by Mössbauer spectroscopy.

Authors:  Ricardo Garcia-Serres; Roman M Davydov; Toshitaka Matsui; Masao Ikeda-Saito; Brian M Hoffman; Boi Hanh Huynh
Journal:  J Am Chem Soc       Date:  2007-02-07       Impact factor: 15.419

4.  Coupling of the distal hydrogen bond network to the exogenous ligand in substrate-bound, resting state human heme oxygenase.

Authors:  Dungeng Peng; Hiroshi Ogura; Wenfeng Zhu; Li-Hua Ma; John P Evans; Paul R Ortiz de Montellano; Gerd N La Mar
Journal:  Biochemistry       Date:  2009-12-01       Impact factor: 3.162

5.  Assignment of Ferriheme Resonances for High- and Low-Spin Forms of Nitrophorin 3 by H and C NMR Spectroscopy and Comparison to Nitrophorin 2: Heme Pocket Structural Similarities and Differences.

Authors:  Tatiana Kh Shokhireva; Robert E Berry; Hongjun Zhang; Nikolai V Shokhirev; F Ann Walker
Journal:  Inorganica Chim Acta       Date:  2008-03-03       Impact factor: 2.545

6.  1H NMR study of the effect of variable ligand on heme oxygenase electronic and molecular structure.

Authors:  Li-Hua Ma; Yangzhong Liu; Xuhong Zhang; Tadashi Yoshida; Gerd N La Mar
Journal:  J Inorg Biochem       Date:  2008-09-05       Impact factor: 4.155

7.  Inactivation of the heme degrading enzyme IsdI by an active site substitution that diminishes heme ruffling.

Authors:  Georgia Ukpabi; Shin-ichi J Takayama; A Grant Mauk; Michael E P Murphy
Journal:  J Biol Chem       Date:  2012-08-13       Impact factor: 5.157

  7 in total

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