Literature DB >> 21788475

Electronic properties of the highly ruffled heme bound to the heme degrading enzyme IsdI.

Shin-ichi J Takayama1, Georgia Ukpabi, Michael E P Murphy, A Grant Mauk.   

Abstract

IsdI, a heme-degrading protein from Staphylococcus aureus, binds heme in a manner that distorts the normally planar heme prosthetic group to an extent greater than that observed so far for any other heme-binding protein. To understand better the relationship between this distinct structural characteristic and the functional properties of IsdI, spectroscopic, electrochemical, and crystallographic results are reported that provide evidence that this heme ruffling is essential to the catalytic activity of the protein and eliminates the need for the water cluster in the distal heme pocket that is essential for the activity of classical heme oxygenases. The lack of heme orientational disorder in (1)H-NMR spectra of the protein argues that the catalytic formation of β- and δ-biliverdin in nearly equal yield results from the ability of the protein to attack opposite sides of the heme ring rather than from binding of the heme substrate in two alternative orientations.

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Year:  2011        PMID: 21788475      PMCID: PMC3156149          DOI: 10.1073/pnas.1101459108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  47 in total

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Journal:  Inorg Chem       Date:  2006-05-01       Impact factor: 5.165

2.  Hybrid orbital deformation (HOD) effect and spectral red-shift property of nonplanar porphyrin.

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3.  Roles of distal Asp in heme oxygenase from Corynebacterium diphtheriae, HmuO: A water-driven oxygen activation mechanism.

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Journal:  J Inorg Biochem       Date:  2005-01       Impact factor: 4.155

5.  Modulating heme redox potential through protein-induced porphyrin distortion.

Authors:  Charles Olea; John Kuriyan; Michael A Marletta
Journal:  J Am Chem Soc       Date:  2010-09-22       Impact factor: 15.419

6.  The IsdG-family of haem oxygenases degrades haem to a novel chromophore.

Authors:  Michelle L Reniere; Georgia N Ukpabi; S Reese Harry; Donald F Stec; Robert Krull; David W Wright; Brian O Bachmann; Michael E Murphy; Eric P Skaar
Journal:  Mol Microbiol       Date:  2010-02-17       Impact factor: 3.501

7.  Crystal structure of rat heme oxygenase-1 in complex with heme bound to azide. Implication for regiospecific hydroxylation of heme at the alpha-meso carbon.

Authors:  Masakazu Sugishima; Hiroshi Sakamoto; Yuichiro Higashimoto; Yoshiaki Omata; Shunsuke Hayashi; Masato Noguchi; Keiichi Fukuyama
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8.  Heme oxygenase-2. Properties of the heme complex of the purified tryptic fragment of recombinant human heme oxygenase-2.

Authors:  K Ishikawa; N Takeuchi; S Takahashi; K M Matera; M Sato; S Shibahara; D L Rousseau; M Ikeda-Saito; T Yoshida
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9.  Origin of the red shifts in the optical absorption bands of nonplanar tetraalkylporphyrins.

Authors:  Raid E Haddad; Stéphanie Gazeau; Jacques Pécaut; Jean-Claude Marchon; Craig J Medforth; John A Shelnutt
Journal:  J Am Chem Soc       Date:  2003-02-05       Impact factor: 15.419

10.  Probing the function of heme distortion in the H-NOX family.

Authors:  Charles Olea; Elizabeth M Boon; Patricia Pellicena; John Kuriyan; Michael A Marletta
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  19 in total

1.  Response to Comment on "Crystal structures of translocator protein (TSPO) and mutant mimic of a human polymorphism".

Authors:  Fei Li; Jian Liu; Yi Zheng; R Michael Garavito; Shelagh Ferguson-Miller
Journal:  Science       Date:  2015-10-29       Impact factor: 47.728

2.  Spectroscopic Evidence for Electronic Control of Heme Hydroxylation by IsdG.

Authors:  Matthew A Conger; Amanda R Cornetta; Matthew D Liptak
Journal:  Inorg Chem       Date:  2019-11-06       Impact factor: 5.165

3.  Iron Acquisition in Mycobacterium tuberculosis.

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Journal:  Chem Rev       Date:  2018-11-26       Impact factor: 60.622

4.  Monooxygenase Substrates Mimic Flavin to Catalyze Cofactorless Oxygenations.

Authors:  Melodie M Machovina; Robert J Usselman; Jennifer L DuBois
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5.  Hydrogen bond donation to the heme distal ligand of Staphylococcus aureus IsdG tunes the electronic structure.

Authors:  Cheryl L Lockhart; Matthew A Conger; Dylanger S Pittman; Matthew D Liptak
Journal:  J Biol Inorg Chem       Date:  2015-04-25       Impact factor: 3.358

6.  A new way to degrade heme: the Mycobacterium tuberculosis enzyme MhuD catalyzes heme degradation without generating CO.

Authors:  Shusuke Nambu; Toshitaka Matsui; Celia W Goulding; Satoshi Takahashi; Masao Ikeda-Saito
Journal:  J Biol Chem       Date:  2013-02-18       Impact factor: 5.157

7.  Heme degradation by Staphylococcus aureus IsdG and IsdI liberates formaldehyde rather than carbon monoxide.

Authors:  Toshitaka Matsui; Shusuke Nambu; Yukari Ono; Celia W Goulding; Kouhei Tsumoto; Masao Ikeda-Saito
Journal:  Biochemistry       Date:  2013-04-24       Impact factor: 3.162

8.  IruO is a reductase for heme degradation by IsdI and IsdG proteins in Staphylococcus aureus.

Authors:  Slade A Loutet; Marek J Kobylarz; Crystal H T Chau; Michael E P Murphy
Journal:  J Biol Chem       Date:  2013-07-26       Impact factor: 5.157

9.  The chlorite dismutase (HemQ) from Staphylococcus aureus has a redox-sensitive heme and is associated with the small colony variant phenotype.

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Journal:  J Biol Chem       Date:  2013-06-04       Impact factor: 5.157

10.  Time-resolved Studies of IsdG Protein Identify Molecular Signposts along the Non-canonical Heme Oxygenase Pathway.

Authors:  Bennett R Streit; Ravi Kant; Monika Tokmina-Lukaszewska; Arianna I Celis; Melodie M Machovina; Eric P Skaar; Brian Bothner; Jennifer L DuBois
Journal:  J Biol Chem       Date:  2015-11-03       Impact factor: 5.157

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