Literature DB >> 11297521

Solution 1H NMR of the active site of substrate-bound, cyanide-inhibited human heme oxygenase. comparison to the crystal structure of the water-ligated form.

G N La Mar1, A Asokan, B Espiritu, D C Yeh, K Auclair, P R Ortiz De Montellano.   

Abstract

The majority of the active site residues of cyanide-inhibited, substrate-bound human heme oxygenase have been assigned on the basis of two-dimensional NMR using the crystal structure of the water-ligated substrate complex as a guide (Schuller, D. J., Wilks, A., Ortiz de Montellano, P. R., and Poulos, T. L. (1999) Nat. Struct. Biol. 6, 860-867). The proximal helix and the N-terminal portion of the distal helix are found to be identical to those in the crystal except that the heme for the major isomer ( approximately 75-80%) in solution is rotated 180 degrees about the alpha-gamma-meso axis relative to the unique orientation in the crystal. The central portion of the distal helix in solution is translated slightly over the heme toward the distal ligand, and a distal four-ring aromatic cluster has moved 1-2 A closer to the heme, which allows for strong hydrogen bonds between the hydroxyls of Tyr-58 and Tyr-137. These latter interactions are proposed to stabilize the closed pocket conducive to the high stereospecificity of the alpha-meso ring opening. The determination of the magnetic axes, for which the major axis is controlled by the Fe-CN orientation, reveals a approximately 20 degrees tilt of the distal ligand from the heme normal in the direction of the alpha-meso bridge, demonstrating that the close placement of the distal helix over the heme exerts control of stereospecificity by both blocking access to the beta, gamma, and delta-meso positions and tilting the axial ligand, a proposed peroxide, toward the alpha-meso position.

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Year:  2001        PMID: 11297521     DOI: 10.1074/jbc.M009974200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  9 in total

1.  Modulation of the axial water hydrogen-bonding properties by chemical modification of the substrate in resting state, substrate-bound heme oxygenase from Neisseria meningitidis; coupling to the distal H-bond network via ordered water molecules.

Authors:  Li-Hua Ma; Yangzhong Liu; Xuhong Zhang; Tadashi Yoshida; Kevin C Langry; Kevin M Smith; Gerd N La Mar
Journal:  J Am Chem Soc       Date:  2006-05-17       Impact factor: 15.419

2.  1H NMR study of the magnetic properties and electronic structure of the hydroxide complex of substrate-bound heme oxygenase from Neisseria meningitidis: influence of the axial water deprotonation on the distal H-bond network.

Authors:  Li-Hua Ma; Yangzhong Liu; Xuhang Zhang; Tadashi Yoshida; Gerd N La Mar
Journal:  J Am Chem Soc       Date:  2006-05-24       Impact factor: 15.419

3.  Alteration of the regiospecificity of human heme oxygenase-1 by unseating of the heme but not disruption of the distal hydrogen bonding network.

Authors:  Jinling Wang; John P Evans; Hiroshi Ogura; Gerd N La Mar; Paul R Ortiz de Montellano
Journal:  Biochemistry       Date:  2006-01-10       Impact factor: 3.162

4.  Investigations of ferric heme cyanide photodissociation in myoglobin and horseradish peroxidase.

Authors:  Weiqiao Zeng; Yuhan Sun; Abdelkrim Benabbas; Paul M Champion
Journal:  J Phys Chem B       Date:  2013-04-03       Impact factor: 2.991

5.  Small molecule antivirulents targeting the iron-regulated heme oxygenase (HemO) of P. aeruginosa.

Authors:  Kellie Hom; Geoffrey A Heinzl; Suntara Eakanunkul; Pedro E M Lopes; Fengtian Xue; Alexander D MacKerell; Angela Wilks
Journal:  J Med Chem       Date:  2013-03-01       Impact factor: 7.446

6.  The orbital ground state of the azide-substrate complex of human heme oxygenase is an indicator of distal H-bonding: implications for the enzyme mechanism.

Authors:  Hiroshi Ogura; John P Evans; Dungeng Peng; James D Satterlee; Paul R Ortiz de Montellano; Gerd N La Mar
Journal:  Biochemistry       Date:  2009-04-14       Impact factor: 3.162

7.  Identification of ligand binding sites of proteins using the Gaussian Network Model.

Authors:  Ceren Tuzmen; Burak Erman
Journal:  PLoS One       Date:  2011-01-25       Impact factor: 3.240

8.  Systematic comparison of crystal and NMR protein structures deposited in the protein data bank.

Authors:  Kresimir Sikic; Sanja Tomic; Oliviero Carugo
Journal:  Open Biochem J       Date:  2010-09-03

9.  Function Coupling Mechanism of PhuS and HemO in Heme Degradation.

Authors:  Michael J Y Lee; Ye Wang; Yafei Jiang; Xichen Li; Jianqiu Ma; Hongwei Tan; Keegan Turner-Wood; Mona N Rahman; Guangju Chen; Zongchao Jia
Journal:  Sci Rep       Date:  2017-09-12       Impact factor: 4.379

  9 in total

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