Literature DB >> 16683803

Modulation of the axial water hydrogen-bonding properties by chemical modification of the substrate in resting state, substrate-bound heme oxygenase from Neisseria meningitidis; coupling to the distal H-bond network via ordered water molecules.

Li-Hua Ma1, Yangzhong Liu, Xuhong Zhang, Tadashi Yoshida, Kevin C Langry, Kevin M Smith, Gerd N La Mar.   

Abstract

The hydrogen bonding of ligated water in ferric, high-spin, resting-state substrate complexes of heme oxygenase from Neisseria meningitidis has been systematically perturbed by variable electron-withdrawing substituents on the hemin periphery. The pattern of 1H NMR-detected dipolar shifts due to the paramagnetic anisotropy is strongly conserved among the four complexes, with the magnitude of dipolar shifts or anisotropy increasing in the order of substituent formyl < vinyl < methyl. The magnetic anisotropy is axial and oriented by the axial Fe-His23 bond, and while individual anisotropies have uncertainties of approximately 5%, the relative values of deltachi (and the zero-field splitting constant, D proportional, variant deltachi(ax)) are defined to 1%. The unique changes in the axial field strength implied by the variable zero-field splitting are in accord with expectations for the axial water serving as a stronger H-bond donor in the order of hemin substituents formyl > vinyl > methyl. These results establish the axial anisotropy (and D) as a sensitive probe of the H-bonding properties of a ligated water in resting-state, substrate complexes of heme oxygenase. Correction of observed labile proton chemical shifts for paramagnetic influences indicates that Gln49 and His53, some approximately 10 angstroms from the iron, sense the change in the ligated water H-bonding to the three nonligated ordered water molecules that link the two side chains to the iron ligand. The present results augur well for detecting and characterizing changes in distal water H-bonding upon mutagenesis of residues in the distal network of ordered water molecules and strong H-bonds.

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Year:  2006        PMID: 16683803      PMCID: PMC2566965          DOI: 10.1021/ja0578505

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  42 in total

1.  Comparison of the heme-free and -bound crystal structures of human heme oxygenase-1.

Authors:  Latesh Lad; David J Schuller; Hideaki Shimizu; Jonathan Friedman; Huiying Li; Paul R Ortiz de Montellano; Thomas L Poulos
Journal:  J Biol Chem       Date:  2002-12-24       Impact factor: 5.157

Review 2.  Heme oxygenase: evolution, structure, and mechanism.

Authors:  Angela Wilks
Journal:  Antioxid Redox Signal       Date:  2002-08       Impact factor: 8.401

3.  Solution 1H NMR investigation of the active site molecular and electronic structures of substrate-bound, cyanide-inhibited HmuO, a bacterial heme oxygenase from Corynebacterium diphtheriae.

Authors:  Yiming Li; Ray T Syvitski; Grace C Chu; Masao Ikeda-Saito; Gerd N La Mar
Journal:  J Biol Chem       Date:  2002-12-11       Impact factor: 5.157

4.  Oxidation of heme to beta- and delta-biliverdin by Pseudomonas aeruginosa heme oxygenase as a consequence of an unusual seating of the heme.

Authors:  Gregori A Caignan; Rahul Deshmukh; Angela Wilks; Yuhong Zeng; Hong-wei Huang; Pierre Moënne-Loccoz; Richard A Bunce; Margaret A Eastman; Mario Rivera
Journal:  J Am Chem Soc       Date:  2002-12-18       Impact factor: 15.419

5.  Homologues of neisserial heme oxygenase in gram-negative bacteria: degradation of heme by the product of the pigA gene of Pseudomonas aeruginosa.

Authors:  M Ratliff; W Zhu; R Deshmukh; A Wilks; I Stojiljkovic
Journal:  J Bacteriol       Date:  2001-11       Impact factor: 3.490

6.  1H NMR detection of immobilized water molecules within a strong distal hydrogen-bonding network of substrate-bound human heme oxygenase-1.

Authors:  Ray T Syvitski; Yiming Li; Karine Auclair; Paul R Ortiz De Montellano; Gerd N La Mar
Journal:  J Am Chem Soc       Date:  2002-12-04       Impact factor: 15.419

7.  Solution 1H NMR characterization of the distal H-bond network and the effective axial field in the resting-state, high-spin ferric, substrate-bound complex of heme oxygenase from N. meningitidis.

Authors:  Yangzhong Liu; Xuhong Zhang; Tadashi Yoshida; Gerd N La Mar
Journal:  J Am Chem Soc       Date:  2005-05-04       Impact factor: 15.419

8.  Rapid and accurate calculation of protein 1H, 13C and 15N chemical shifts.

Authors:  Stephen Neal; Alex M Nip; Haiyan Zhang; David S Wishart
Journal:  J Biomol NMR       Date:  2003-07       Impact factor: 2.835

9.  Crystal structures of the NO- and CO-bound heme oxygenase from Neisseriae meningitidis. Implications for O2 activation.

Authors:  Jonathan Friedman; Latesh Lad; Rahul Deshmukh; Huiying Li; Angela Wilks; Thomas L Poulos
Journal:  J Biol Chem       Date:  2003-06-22       Impact factor: 5.157

10.  Crystal structures of ferrous and CO-, CN(-)-, and NO-bound forms of rat heme oxygenase-1 (HO-1) in complex with heme: structural implications for discrimination between CO and O2 in HO-1.

Authors:  Masakazu Sugishima; Hiroshi Sakamoto; Masato Noguchi; Keiichi Fukuyama
Journal:  Biochemistry       Date:  2003-08-26       Impact factor: 3.162

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  6 in total

1.  Solution 1H NMR characterization of substrate-free C. diphtheriae heme oxygenase: pertinence for determining magnetic axes in paramagnetic substrate complexes.

Authors:  Zhenming Du; Masaki Unno; Toshitaka Matsui; Masao Ikeda-Saito; Gerd N La Mar
Journal:  J Inorg Biochem       Date:  2010-07-01       Impact factor: 4.155

2.  Influence of substrate modification and C-terminal truncation on the active site structure of substrate-bound heme oxygenase from Neisseriae meningitidis. A 1H NMR study.

Authors:  Dungeng Peng; James D Satterlee; Li-Hua Ma; Jerry L Dallas; Kevin M Smith; Xuhong Zhang; Michihiko Sato; Gerd N La Mar
Journal:  Biochemistry       Date:  2011-09-21       Impact factor: 3.162

3.  Electron spin density on the axial His ligand of high-spin and low-spin nitrophorin 2 probed by heteronuclear NMR spectroscopy.

Authors:  Luciano A Abriata; María-Eugenia Zaballa; Robert E Berry; Fei Yang; Hongjun Zhang; F Ann Walker; Alejandro J Vila
Journal:  Inorg Chem       Date:  2013-01-17       Impact factor: 5.165

4.  Assignment of the ferriheme resonances of high- and low-spin forms of the symmetrical hemin-reconstituted nitrophorins 1-4 by 1H and 13C NMR spectroscopy: the dynamics of heme ruffling deformations.

Authors:  Tatiana K Shokhireva; Nikolai V Shokhirev; Robert E Berry; Hongjun Zhang; F Ann Walker
Journal:  J Biol Inorg Chem       Date:  2008-05-06       Impact factor: 3.358

5.  Coupling of the distal hydrogen bond network to the exogenous ligand in substrate-bound, resting state human heme oxygenase.

Authors:  Dungeng Peng; Hiroshi Ogura; Wenfeng Zhu; Li-Hua Ma; John P Evans; Paul R Ortiz de Montellano; Gerd N La Mar
Journal:  Biochemistry       Date:  2009-12-01       Impact factor: 3.162

6.  1H NMR study of the effect of variable ligand on heme oxygenase electronic and molecular structure.

Authors:  Li-Hua Ma; Yangzhong Liu; Xuhong Zhang; Tadashi Yoshida; Gerd N La Mar
Journal:  J Inorg Biochem       Date:  2008-09-05       Impact factor: 4.155

  6 in total

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