Literature DB >> 18458965

Assignment of the ferriheme resonances of high- and low-spin forms of the symmetrical hemin-reconstituted nitrophorins 1-4 by 1H and 13C NMR spectroscopy: the dynamics of heme ruffling deformations.

Tatiana K Shokhireva1, Nikolai V Shokhirev, Robert E Berry, Hongjun Zhang, F Ann Walker.   

Abstract

The four major nitrophorins (NPs) of the adult blood-sucking insect Rhodnius prolixus have been reconstituted with the "symmetrical hemin" 2,4-dimethyldeuterohemin, and their NMR spectra have been investigated as the high-spin (S=5/2) aqua and low-spin (S=1/2) N-methylimidazole (NMeIm) and cyanide complexes. The NMeIm complexes allow assignment of the high-spin hemin resonances by saturation transfer difference spectroscopy. The cyanide complexes were investigated as paramagnetic analogues of the NO complexes. It is shown that the hemin ring is highly distorted from planarity, much more so for NP2 than for NP1 and NP4 (with ruffling being the major distortion mode), for both high- and low-spin forms. For the cyanide complexes, the conformation of the distorted ring changes on the NMR timescale to yield chemical exchange (exchange spectroscopy, EXSY) cross peaks for NP1sym(CN), NP3sym(CN) and NP4sym(CN) but not for NP2sym(CN). These changes in nonplanar conformation are visualized as a "rolling" of the ruffled macrocycle ridges through some number of degrees, the lowest-energy ruffling mode. This probably occurs in response to slow protein dynamics that cause the I120 and L132 side chains in the distal heme pocket to move in opposite directions (up and away vs. down and toward the hemin ring). This in turn changes the out-of-plane displacements of the 2M and 3M of the symmetrical hemin on the NMR timescale. Two other types of dynamics, i.e., changes in heme seating and NMeIm rotation, are also observed. The highly distorted heme and the dynamics it causes are unique to the NPs and a few other heme proteins with highly distorted macrocycles.

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Year:  2008        PMID: 18458965     DOI: 10.1007/s00775-008-0381-8

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  49 in total

1.  The solution structure of oxidized Escherichia coli cytochrome b562.

Authors:  F Arnesano; L Banci; I Bertini; J Faraone-Mennella; A Rosato; P D Barker; A R Fersht
Journal:  Biochemistry       Date:  1999-07-06       Impact factor: 3.162

2.  Kinetics and equilibria in ligand binding by nitrophorins 1-4: evidence for stabilization of a nitric oxide-ferriheme complex through a ligand-induced conformational trap.

Authors:  J F Andersen; X D Ding; C Balfour; T K Shokhireva; D E Champagne; F A Walker; W R Montfort
Journal:  Biochemistry       Date:  2000-08-22       Impact factor: 3.162

3.  Application of the paramagnetic dipole field for solution NMR active site structure determination in low-spin, cyanide-inhibited ferric hemoproteins.

Authors:  Gerd N La Mar
Journal:  IUBMB Life       Date:  2007 Aug-Sep       Impact factor: 3.885

4.  Nitric oxide binding to nitrophorin 4 induces complete distal pocket burial.

Authors:  A Weichsel; J F Andersen; S A Roberts; W R Montfort
Journal:  Nat Struct Biol       Date:  2000-07

Review 5.  American trypanosomiasis (Chagas' disease)--a tropical disease now in the United States.

Authors:  L V Kirchhoff
Journal:  N Engl J Med       Date:  1993-08-26       Impact factor: 91.245

6.  Proton nuclear magnetic resonance investigation of the electronic structure of compound I of horseradish peroxidase.

Authors:  G N La Mar; J S de Ropp; K M Smith; K C Langry
Journal:  J Biol Chem       Date:  1981-01-10       Impact factor: 5.157

7.  Changes in salivary nitrophorin profile during the life cycle of the blood-sucking bug Rhodnius prolixus.

Authors:  Mônica F Moreira; Heloisa S L Coelho; Russolina B Zingali; Pedro L Oliveira; Hatisaburo Masuda
Journal:  Insect Biochem Mol Biol       Date:  2003-01       Impact factor: 4.714

8.  Proton NMR study of the comparative electronic/magnetic properties and dynamics of the acid in equilibrium with alkaline transition in a series of ferricytochromes c'.

Authors:  G N La Mar; J T Jackson; L B Dugad; M A Cusanovich; R G Bartsch
Journal:  J Biol Chem       Date:  1990-09-25       Impact factor: 5.157

9.  Axial ligand complexes of the Rhodnius nitrophorins: reduction potentials, binding constants, EPR spectra, and structures of the 4-iodopyrazole and imidazole complexes of NP4.

Authors:  Robert E Berry; Xiao D Ding; Tatjana Kh Shokhireva; Andrzej Weichsel; William R Montfort; F Ann Walker
Journal:  J Biol Inorg Chem       Date:  2003-12-13       Impact factor: 3.358

10.  The crystal structure of nitrophorin 4 at 1.5 A resolution: transport of nitric oxide by a lipocalin-based heme protein.

Authors:  J F Andersen; A Weichsel; C A Balfour; D E Champagne; W R Montfort
Journal:  Structure       Date:  1998-10-15       Impact factor: 5.006

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  19 in total

1.  Leghemoglobin green derivatives with nitrated hemes evidence production of highly reactive nitrogen species during aging of legume nodules.

Authors:  Joaquín Navascués; Carmen Pérez-Rontomé; Marina Gay; Manuel Marcos; Fei Yang; F Ann Walker; Alain Desbois; Joaquín Abián; Manuel Becana
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-30       Impact factor: 11.205

2.  Assignment of the ferriheme resonances of the high-spin forms of nitrophorins 1 and 4 by 1H NMR spectroscopy: comparison to structural data obtained from X-ray crystallography.

Authors:  Tatiana Kh Shokhireva; Kevin M Smith; Robert E Berry; Nikolai V Shokhirev; Celia A Balfour; Hongjun Zhang; F Ann Walker
Journal:  Inorg Chem       Date:  2007-01-08       Impact factor: 5.165

3.  NMR and DFT investigation of heme ruffling: functional implications for cytochrome c.

Authors:  Matthew D Liptak; Xin Wen; Kara L Bren
Journal:  J Am Chem Soc       Date:  2010-07-21       Impact factor: 15.419

4.  NMR studies of nitrophorin distal pocket side chain effects on the heme orientation and seating of NP2 as compared to NP1.

Authors:  Tatiana K Shokhireva; Robert E Berry; Hongjun Zhang; Nikolai V Shokhirev; F Ann Walker
Journal:  J Inorg Biochem       Date:  2011-06-17       Impact factor: 4.155

5.  Native N-terminus nitrophorin 2 from the kissing bug: similarities to and differences from NP2(D1A).

Authors:  Robert E Berry; Dhanasekaran Muthu; Tatiana K Shokhireva; Sarah A Garrett; Hongjun Zhang; F Ann Walker
Journal:  Chem Biodivers       Date:  2012-09       Impact factor: 2.408

6.  Nuclear inelastic scattering and Mössbauer spectroscopy as local probes for ligand binding modes and electronic properties in proteins: vibrational behavior of a ferriheme center inside a β-barrel protein.

Authors:  Beate Moeser; Adam Janoschka; Juliusz A Wolny; Hauke Paulsen; Igor Filippov; Robert E Berry; Hongjun Zhang; Aleksandr I Chumakov; F Ann Walker; Volker Schünemann
Journal:  J Am Chem Soc       Date:  2012-02-27       Impact factor: 15.419

7.  Effect of mutation of carboxyl side-chain amino acids near the heme on the midpoint potentials and ligand binding constants of nitrophorin 2 and its NO, histamine, and imidazole complexes.

Authors:  Robert E Berry; Maxim N Shokhirev; Arthur Y W Ho; Fei Yang; Tatiana K Shokhireva; Hongjun Zhang; Andrzej Weichsel; William R Montfort; F Ann Walker
Journal:  J Am Chem Soc       Date:  2009-02-18       Impact factor: 15.419

8.  Influence of heme c attachment on heme conformation and potential.

Authors:  Jesse G Kleingardner; Benjamin D Levin; Giorgio Zoppellaro; K Kristoffer Andersson; Sean J Elliott; Kara L Bren
Journal:  J Biol Inorg Chem       Date:  2018-08-24       Impact factor: 3.358

9.  NMR investigations of nitrophorin 2 belt side chain effects on heme orientation and seating of native N-terminus NP2 and NP2(D1A).

Authors:  Robert E Berry; Dhanasekaran Muthu; Tatiana K Shokhireva; Sarah A Garrett; Allena M Goren; Hongjun Zhang; F Ann Walker
Journal:  J Biol Inorg Chem       Date:  2013-11-30       Impact factor: 3.358

10.  1H and 13C NMR spectroscopic studies of the ferriheme resonances of three low-spin complexes of wild-type nitrophorin 2 and nitrophorin 2(V24E) as a function of pH.

Authors:  Fei Yang; Markus Knipp; Tatiana K Shokhireva; Robert E Berry; Hongjun Zhang; F Ann Walker
Journal:  J Biol Inorg Chem       Date:  2009-06-11       Impact factor: 3.358

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