Literature DB >> 16683745

Protein folding thermodynamics and dynamics: where physics, chemistry, and biology meet.

Eugene Shakhnovich1.   

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Year:  2006        PMID： 16683745      PMCID： PMC2735084          DOI： 10.1021/cr040425u

Source DB:  PubMed          Journal:  Chem Rev        ISSN： 0009-2665            Impact factor:   60.622


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  230 in total

1.  A theoretical search for folding/unfolding nuclei in three-dimensional protein structures.

Authors:  O V Galzitskaya; A V Finkelstein
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

Review 2.  Fast kinetics and mechanisms in protein folding.

Authors:  W A Eaton; V Muñoz; S J Hagen; G S Jas; L J Lapidus; E R Henry; J Hofrichter
Journal:  Annu Rev Biophys Biomol Struct       Date:  2000

3.  Understanding hierarchical protein evolution from first principles.

Authors:  N V Dokholyan; E I Shakhnovich
Journal:  J Mol Biol       Date:  2001-09-07       Impact factor: 5.469

4.  Complete change of the protein folding transition state upon circular permutation.

Authors:  Magnus Lindberg; Jeanette Tångrot; Mikael Oliveberg
Journal:  Nat Struct Biol       Date:  2002-11

5.  Geometry and symmetry presculpt the free-energy landscape of proteins.

Authors:  Trinh Xuan Hoang; Antonio Trovato; Flavio Seno; Jayanth R Banavar; Amos Maritan
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-17       Impact factor: 11.205

6.  Obligatory steps in protein folding and the conformational diversity of the transition state.

Authors:  J C Martinez; M T Pisabarro; L Serrano
Journal:  Nat Struct Biol       Date:  1998-08

7.  An elementary mode coupling theory of random heteropolymer dynamics.

Authors:  S Takada; J J Portman; P G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  1997-03-18       Impact factor: 11.205

8.  Theory of cooperative transitions in protein molecules. I. Why denaturation of globular protein is a first-order phase transition.

Authors:  E I Shakhnovich; A V Finkelstein
Journal:  Biopolymers       Date:  1989-10       Impact factor: 2.505

9.  Mutational analysis of acylphosphatase suggests the importance of topology and contact order in protein folding.

Authors:  F Chiti; N Taddei; P M White; M Bucciantini; F Magherini; M Stefani; C M Dobson
Journal:  Nat Struct Biol       Date:  1999-11

10.  Computational de novo design and characterization of a four-helix bundle protein that selectively binds a nonbiological cofactor.

Authors:  Frank V Cochran; Sophia P Wu; Wei Wang; Vikas Nanda; Jeffery G Saven; Michael J Therien; William F DeGrado
Journal:  J Am Chem Soc       Date:  2005-02-09       Impact factor: 15.419
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  99 in total

1.  Optimizing ring assembly reveals the strength of weak interactions.

Authors:  Eric J Deeds; John A Bachman; Walter Fontana
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-30       Impact factor: 11.205

2.  A structural perspective on the dynamics of kinesin motors.

Authors:  Changbong Hyeon; José N Onuchic
Journal:  Biophys J       Date:  2011-12-07       Impact factor: 4.033

Review 3.  Capturing the essence of folding and functions of biomolecules using coarse-grained models.

Authors:  Changbong Hyeon; D Thirumalai
Journal:  Nat Commun       Date:  2011-09-27       Impact factor: 14.919

4.  Thermal adaptation of viruses and bacteria.

Authors:  Peiqiu Chen; Eugene I Shakhnovich
Journal:  Biophys J       Date:  2010-04-07       Impact factor: 4.033

5.  Denaturant-dependent folding of GFP.

Authors:  Govardhan Reddy; Zhenxing Liu; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-09       Impact factor: 11.205

6.  Statistical potential for assessment and prediction of protein structures.

Authors:  Min-Yi Shen; Andrej Sali
Journal:  Protein Sci       Date:  2006-11       Impact factor: 6.725

7.  Understanding ensemble protein folding at atomic detail.

Authors:  Isaac A Hubner; Eric J Deeds; Eugene I Shakhnovich
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-09       Impact factor: 11.205

8.  Axis-dependent anisotropy in protein unfolding from integrated nonequilibrium single-molecule experiments, analysis, and simulation.

Authors:  Rene A Nome; Jason Ming Zhao; Wouter D Hoff; Norbert F Scherer
Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-19       Impact factor: 11.205

9.  Protein folding: then and now.

Authors:  Yiwen Chen; Feng Ding; Huifen Nie; Adrian W Serohijos; Shantanu Sharma; Kyle C Wilcox; Shuangye Yin; Nikolay V Dokholyan
Journal:  Arch Biochem Biophys       Date:  2007-06-08       Impact factor: 4.013

10.  Lineage-specific differences in the amino acid substitution process.

Authors:  Snehalata Huzurbazar; Grigory Kolesov; Steven E Massey; Katherine C Harris; Alexander Churbanov; David A Liberles
Journal:  J Mol Biol       Date:  2010-01-15       Impact factor: 5.469
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