Literature DB >> 16674835

NMR structures of paramagnetic metalloproteins.

Fabio Arnesano1, Lucia Banci, Mario Piccioli.   

Abstract

Metalloproteins represent a large share of the proteome and many of them contain paramagnetic metal ions. The knowledge, at atomic resolution, of their structure in solution is important to understand processes in which they are involved, such as electron transfer mechanisms, enzymatic reactions, metal homeostasis and metal trafficking, as well as interactions with their partners. Formerly considered as unfeasible, the first structure in solution by nuclear magnetic resonance (NMR) of a paramagnetic protein was obtained in 1994. Methodological and instrumental advancements pursued over the last decade are such that NMR structure of paramagnetic proteins may be now routinely obtained. We focus here on approaches and problems related to the structure determination of paramagnetic proteins in solution through NMR spectroscopy. After a survey of the background theory, we show how the effects produced by the presence of a paramagnetic metal ion on the NMR parameters, which are in many cases deleterious for the detection of NMR spectra, can be overcome and turned into an additional source of structural restraints. We also briefly address features and perspectives given by the use of 13C-detected protonless NMR spectroscopy for proteins in solution. The structural information obtained through the exploitation of a paramagnetic center are discussed for some Cu2+ -binding proteins and for Ca2+ -binding proteins, where the replacement of a diamagnetic metal ion with suitable paramagnetic metal ions suggests novel approaches to the structural characterization of proteins containing diamagnetic and NMR-silent metal ions.

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Year:  2006        PMID: 16674835     DOI: 10.1017/S0033583506004161

Source DB:  PubMed          Journal:  Q Rev Biophys        ISSN: 0033-5835            Impact factor:   5.318


  26 in total

1.  Structure and backbone dynamics of a microcrystalline metalloprotein by solid-state NMR.

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Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-21       Impact factor: 11.205

2.  A new carbamidemethyl-linked lanthanoid chelating tag for PCS NMR spectroscopy of proteins in living HeLa cells.

Authors:  Yuya Hikone; Go Hirai; Masaki Mishima; Kohsuke Inomata; Teppei Ikeya; Souichiro Arai; Masahiro Shirakawa; Mikiko Sodeoka; Yutaka Ito
Journal:  J Biomol NMR       Date:  2016-09-08       Impact factor: 2.835

Review 3.  Paramagnetic labelling of proteins and oligonucleotides for NMR.

Authors:  Xun-Cheng Su; Gottfried Otting
Journal:  J Biomol NMR       Date:  2009-06-16       Impact factor: 2.835

Review 4.  Paramagnetic NMR probes for characterization of the dynamic conformations and interactions of oligosaccharides.

Authors:  Koichi Kato; Takumi Yamaguchi
Journal:  Glycoconj J       Date:  2015-06-07       Impact factor: 2.916

5.  How reliable are pseudocontact shifts induced in proteins and ligands by mobile paramagnetic metal tags? A modelling study.

Authors:  Dmitry Shishmarev; Gottfried Otting
Journal:  J Biomol NMR       Date:  2013-05-08       Impact factor: 2.835

6.  The IR-¹⁵N-HSQC-AP experiment: a new tool for NMR spectroscopy of paramagnetic molecules.

Authors:  Simone Ciofi-Baffoni; Angelo Gallo; Riccardo Muzzioli; Mario Piccioli
Journal:  J Biomol NMR       Date:  2014-01-11       Impact factor: 2.835

7.  CACA-TOCSY with alternate 13C-12C labeling: a 13Calpha direct detection experiment for mainchain resonance assignment, dihedral angle information, and amino acid type identification.

Authors:  Koh Takeuchi; Dominique P Frueh; Zhen-Yu J Sun; Sebastian Hiller; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2010-04-10       Impact factor: 2.835

8.  Zinc-binding structure of a catalytic amyloid from solid-state NMR.

Authors:  Myungwoon Lee; Tuo Wang; Olga V Makhlynets; Yibing Wu; Nicholas F Polizzi; Haifan Wu; Pallavi M Gosavi; Jan Stöhr; Ivan V Korendovych; William F DeGrado; Mei Hong
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-31       Impact factor: 11.205

9.  Nitrogen detected TROSY at high field yields high resolution and sensitivity for protein NMR.

Authors:  Koh Takeuchi; Haribabu Arthanari; Ichio Shimada; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2015-10-23       Impact factor: 2.835

10.  Site-specific tagging proteins with a rigid, small and stable transition metal chelator, 8-hydroxyquinoline, for paramagnetic NMR analysis.

Authors:  Yin Yang; Feng Huang; Thomas Huber; Xun-Cheng Su
Journal:  J Biomol NMR       Date:  2016-01-06       Impact factor: 2.835

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