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Literature DB >> 19529883

Paramagnetic labelling of proteins and oligonucleotides for NMR.

Abstract

Paramagnetic effects offer a rich source of long-range structural restraints. Here we review current methods for site-specific tagging of proteins and oligonucleotides with paramagnetic molecules. The paramagnetic tags include nitroxide radicals and metal chelators. Particular emphasis is placed on tags suitable for site-specific and rigid attachment of lanthanide ions to macromolecules.

Entities: Chemical

Mesh：

Substances：

Year: 2009 PMID： 19529883 DOI： 10.1007/s10858-009-9331-1

Source DB: PubMed Journal: J Biomol NMR ISSN： 0925-2738 Impact factor: 2.835

87 in total

1. Structural characterization of proteins with an attached ATCUN motif by paramagnetic relaxation enhancement NMR spectroscopy.

Authors: L W Donaldson; N R Skrynnikov; W Y Choy; D R Muhandiram; B Sarkar; J D Forman-Kay; L E Kay
Journal: J Am Chem Soc Date: 2001-10-10 Impact factor: 15.419

2. Monitoring RNA base structure and dynamics using site-directed spin labeling.

Authors: Peter Z Qin; Kálmán Hideg; Juli Feigon; Wayne L Hubbell
Journal: Biochemistry Date: 2003-06-10 Impact factor: 3.162

Review 3. Paramagnetic tagging of diamagnetic proteins for solution NMR.

Authors: Fernando Rodriguez-Castañeda; Peter Haberz; Andrei Leonov; Christian Griesinger
Journal: Magn Reson Chem Date: 2006-07 Impact factor: 2.447

4. Terbium luminescence in synthetic peptide loops from calcium-binding proteins with different energy donors.

Authors: J P MacManus; C W Hogue; B J Marsden; M Sikorska; A G Szabo
Journal: J Biol Chem Date: 1990-06-25 Impact factor: 5.157

5. A powerful combinatorial screen to identify high-affinity terbium(III)-binding peptides.

Authors: Mark Nitz; Katherine J Franz; Rebecca L Maglathlin; Barbara Imperiali
Journal: Chembiochem Date: 2003-04-04 Impact factor: 3.164

6. Convenient synthesis of multifunctional EDTA-based chiral metal chelates substituted with an S-mesylcysteine.

Authors: Andrei Leonov; Brigitte Voigt; Fernando Rodriguez-Castañeda; Peyman Sakhaii; Christian Griesinger
Journal: Chemistry Date: 2005-05-20 Impact factor: 5.236

7. Proton nuclear magnetic resonance determination of the sequential ytterbium replacement of calcium in carp parvalbumin.

Authors: L Lee; B D Sykes
Journal: Biochemistry Date: 1981-03-03 Impact factor: 3.162

8. A novel 5 displacement spin-labeling technique for electron paramagnetic resonance spectroscopy of RNA.

Authors: J C Macosko; M S Pio; I Tinoco; Y K Shin
Journal: RNA Date: 1999-09 Impact factor: 4.942

9. Rational design of a conformation-switchable Ca2+- and Tb3+-binding protein without the use of multiple coupled metal-binding sites.

Authors: Shunyi Li; Wei Yang; Anna W Maniccia; Doyle Barrow; Harianto Tjong; Huan-Xiang Zhou; Jenny J Yang
Journal: FEBS J Date: 2008-09-10 Impact factor: 5.542

10. Genetic incorporation of a metal-ion chelating amino acid into proteins as a biophysical probe.

Authors: Hyun Soo Lee; Glen Spraggon; Peter G Schultz; Feng Wang
Journal: J Am Chem Soc Date: 2009-02-25 Impact factor: 15.419

51 in total

1. Structure and backbone dynamics of a microcrystalline metalloprotein by solid-state NMR.

Authors: Michael J Knight; Andrew J Pell; Ivano Bertini; Isabella C Felli; Leonardo Gonnelli; Roberta Pierattelli; Torsten Herrmann; Lyndon Emsley; Guido Pintacuda
Journal: Proc Natl Acad Sci U S A Date: 2012-06-21 Impact factor: 11.205

2. MaxOcc: a web portal for maximum occurrence analysis.

Authors: Ivano Bertini; Lucio Ferella; Claudio Luchinat; Giacomo Parigi; Maxim V Petoukhov; Enrico Ravera; Antonio Rosato; Dmitri I Svergun
Journal: J Biomol NMR Date: 2012-05-26 Impact factor: 2.835

3. Engineering encodable lanthanide-binding tags into loop regions of proteins.

Authors: Katja Barthelmes; Anne M Reynolds; Ezra Peisach; Hendrik R A Jonker; Nicholas J DeNunzio; Karen N Allen; Barbara Imperiali; Harald Schwalbe
Journal: J Am Chem Soc Date: 2011-02-02 Impact factor: 15.419

4. Cobalt-based paramagnetic probe to study RNA-protein interactions by NMR.

Authors: Leah M Seebald; Christopher M DeMott; Srivathsan Ranganathan; Papa Nii Asare-Okai; Anastasia Glazunova; Alan Chen; Alexander Shekhtman; Maksim Royzen
Journal: J Inorg Biochem Date: 2017-02-24 Impact factor: 4.155

5. A new carbamidemethyl-linked lanthanoid chelating tag for PCS NMR spectroscopy of proteins in living HeLa cells.

Authors: Yuya Hikone; Go Hirai; Masaki Mishima; Kohsuke Inomata; Teppei Ikeya; Souichiro Arai; Masahiro Shirakawa; Mikiko Sodeoka; Yutaka Ito
Journal: J Biomol NMR Date: 2016-09-08 Impact factor: 2.835

6. Mapping the encounter state of a transient protein complex by PRE NMR spectroscopy.

Authors: Alexander N Volkov; Marcellus Ubbink; Nico A J van Nuland
Journal: J Biomol NMR Date: 2010-11-04 Impact factor: 2.835

7. Theory and practice of using solvent paramagnetic relaxation enhancement to characterize protein conformational dynamics.

Authors: Zhou Gong; Charles D Schwieters; Chun Tang
Journal: Methods Date: 2018-04-12 Impact factor: 3.608

8. A topical issue: production and labeling of biological macromolecules for NMR investigations.

Authors: Gerhard Wagner
Journal: J Biomol NMR Date: 2010-01 Impact factor: 2.835

9. Information content of long-range NMR data for the characterization of conformational heterogeneity.

Authors: Witold Andrałojć; Konstantin Berlin; David Fushman; Claudio Luchinat; Giacomo Parigi; Enrico Ravera; Luca Sgheri
Journal: J Biomol NMR Date: 2015-06-05 Impact factor: 2.835

Review 10. Paramagnetic NMR probes for characterization of the dynamic conformations and interactions of oligosaccharides.

Authors: Koichi Kato; Takumi Yamaguchi
Journal: Glycoconj J Date: 2015-06-07 Impact factor: 2.916