Literature DB >> 16551096

The effect of heme environment on the hydrogen abstraction reaction of camphor in P450cam catalysis: a QM/MM study.

Ahmet Altun1, Victor Guallar, Richard A Friesner, Sason Shaik, Walter Thiel.   

Abstract

The discrepancies between the published QM/MM studies (Schöneboom, J. C.; Cohen, S.; Lin, H.; Shaik, S.; Thiel, W. J. Am. Chem. Soc. 2004, 126, 4017; Guallar, V.; Friesner, R. A. J. Am. Chem. Soc. 2004, 126, 8501) on H-abstraction of camphor in P450cam have largely been resolved. The crystallographic water molecule 903 situated near the oxo atom of Compound I acts as a catalyst for H-abstraction, lowering the barrier by about 4 kcal/mol. Spin density at the A-propionate side chain of heme can occur in the case of incomplete screening but has no major effect on the computed barrier.

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Year:  2006        PMID: 16551096      PMCID: PMC3025707          DOI: 10.1021/ja058196w

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  9 in total

1.  Cytochrome P450CAM enzymatic catalysis cycle: a quantum mechanics/molecular mechanics study.

Authors:  Victor Guallar; Richard A Friesner
Journal:  J Am Chem Soc       Date:  2004-07-14       Impact factor: 15.419

2.  Quantum mechanical/molecular mechanical investigation of the mechanism of C-H hydroxylation of camphor by cytochrome P450cam: theory supports a two-state rebound mechanism.

Authors:  Jan C Schöneboom; Shimrit Cohen; Hai Lin; Sason Shaik; Walter Thiel
Journal:  J Am Chem Soc       Date:  2004-03-31       Impact factor: 15.419

3.  Electronic structure of compound I in human isoforms of cytochrome P450 from QM/MM modeling.

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Journal:  J Am Chem Soc       Date:  2005-09-21       Impact factor: 15.419

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Journal:  J Inorg Biochem       Date:  2006-03-02       Impact factor: 4.155

5.  Exceptionally stable salt bridges in cytochrome P450cam have functional roles.

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Journal:  Science       Date:  2000-03-03       Impact factor: 47.728

7.  Peripheral heme substituents control the hydrogen-atom abstraction chemistry in cytochromes P450.

Authors:  Victor Guallar; Mu-Hyun Baik; Stephen J Lippard; Richard A Friesner
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-27       Impact factor: 11.205

8.  The elusive oxidant species of cytochrome P450 enzymes: characterization by combined quantum mechanical/molecular mechanical (QM/MM) calculations.

Authors:  Jan C Schöneboom; Hai Lin; Nathalie Reuter; Walter Thiel; Shimrit Cohen; François Ogliaro; Sason Shaik
Journal:  J Am Chem Soc       Date:  2002-07-10       Impact factor: 15.419

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  9 in total
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