Literature DB >> 9154922

Exceptionally stable salt bridges in cytochrome P450cam have functional roles.

V Lounnas1, R C Wade.   

Abstract

A long-standing puzzle in structure-function studies of cytochrome P450cam is how the substrate, camphor, reaches the buried active site. The crystal structure shows no channel from the surface to the active site large enough for substrate to pass through. Recent experiments indicate that access of the rather nonpolar substrate to the active site is controlled by electrostatic interactions and may involve rupture of the two salt links to Asp251 [Deprez, E., Gerber, N. C., Di Primo, C., Douzou, P., Sligar, S. G., & Hui Bon Hoa, G. (1994) Biochemistry 33, 14464-14468]. Consequently, we have computed the electrostatic strength of 53 ionic pairs, including 32 salt links, in cytochrome P450cam by numerical solution of the finite-difference linearized Poisson-Boltzmann equation. The calculated electrostatic free energies, delta Gtot, of the salt links range from -9 to +6 kcal/mol with approximately 60% of the salt links being energetically favorable and 40% being unfavorable with respect to mutation to their uncharged, nonpolar isosteres. Strikingly, of the four most stable salt links in the protein (delta Gtot < -6 kcal/mol), two involve the propionate groups of the heme and the other two involve Asp251. In the modeled D251N mutant, for which electrostatic effects on substrate binding are diminished, the latter two salt links lose their stability (delta Gtot > -2.4 kcal/mol). Thus it appears that cytochrome P450cam has evolved four unusually strong salt bridges, stabilized by surrounding charged and polar groups in the protein, to keep its heme cofactor in place and to regulate substrate binding.

Entities:  

Mesh:

Substances:

Year:  1997        PMID: 9154922     DOI: 10.1021/bi9622940

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  18 in total

1.  The effect of heme environment on the hydrogen abstraction reaction of camphor in P450cam catalysis: a QM/MM study.

Authors:  Ahmet Altun; Victor Guallar; Richard A Friesner; Sason Shaik; Walter Thiel
Journal:  J Am Chem Soc       Date:  2006-03-29       Impact factor: 15.419

2.  The dynamics of camphor in the cytochrome P450 CYP101D2.

Authors:  Shabana Vohra; Maria Musgaard; Stephen G Bell; Luet-Lok Wong; Weihong Zhou; Philip C Biggin
Journal:  Protein Sci       Date:  2013-08-12       Impact factor: 6.725

3.  Computation of electrostatic complements to proteins: a case of charge stabilized binding.

Authors:  L T Chong; S E Dempster; Z S Hendsch; L P Lee; B Tidor
Journal:  Protein Sci       Date:  1998-01       Impact factor: 6.725

4.  Electrostatic steering and ionic tethering in enzyme-ligand binding: insights from simulations.

Authors:  R C Wade; R R Gabdoulline; S K Lüdemann; V Lounnas
Journal:  Proc Natl Acad Sci U S A       Date:  1998-05-26       Impact factor: 11.205

5.  Coupled flexibility change in cytochrome P450cam substrate binding determined by neutron scattering, NMR, and molecular dynamics simulation.

Authors:  Yinglong Miao; Zheng Yi; Carey Cantrell; Dennis C Glass; Jerome Baudry; Nitin Jain; Jeremy C Smith
Journal:  Biophys J       Date:  2012-11-20       Impact factor: 4.033

Review 6.  Heme enzyme structure and function.

Authors:  Thomas L Poulos
Journal:  Chem Rev       Date:  2014-01-08       Impact factor: 60.622

7.  Relationship between ion pair geometries and electrostatic strengths in proteins.

Authors:  Sandeep Kumar; Ruth Nussinov
Journal:  Biophys J       Date:  2002-09       Impact factor: 4.033

8.  Synergistic effects of mutations in cytochrome P450cam designed to mimic CYP101D1.

Authors:  Dipanwita Batabyal; Huiying Li; Thomas L Poulos
Journal:  Biochemistry       Date:  2013-07-31       Impact factor: 3.162

9.  Structures of prostacyclin synthase and its complexes with substrate analog and inhibitor reveal a ligand-specific heme conformation change.

Authors:  Yi-Ching Li; Chia-Wang Chiang; Hui-Chun Yeh; Pei-Yung Hsu; Frank G Whitby; Lee-Ho Wang; Nei-Li Chan
Journal:  J Biol Chem       Date:  2007-11-21       Impact factor: 5.157

10.  Differences in electrostatic properties at antibody-antigen binding sites: implications for specificity and cross-reactivity.

Authors:  Neeti Sinha; Srinivasan Mohan; Claudia A Lipschultz; Sandra J Smith-Gill
Journal:  Biophys J       Date:  2002-12       Impact factor: 4.033

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.