Literature DB >> 15238007

Cytochrome P450CAM enzymatic catalysis cycle: a quantum mechanics/molecular mechanics study.

Victor Guallar1, Richard A Friesner.   

Abstract

The catalytic pathway of cytochrome P450cam is studied by means of a hybrid quantum mechanics/molecular mechanics method. Our results reveal an active role of the enzyme in the different catalytic steps. The protein initially controls the energy gap between the high- and low-spin states in the substrate binding process, allowing thermodynamic reduction by putidaredoxin reductase and molecular oxygen addition. A second electron reduction activates the delivery of protons to the active site through a selective interaction of Thr252 and the distal oxygen causing the O--O cleavage. Finally, the protein environment catalyzes the substrate hydrogen atom abstraction step with a remarkably low free energy barrier ( approximately 8 kcal/mol). Our results are consistent with the effect of mutations on the enzymatic efficacy and provide a satisfactory explanation for the experimental failure to trap the proposed catalytically competent species, a ferryl Fe(IV) heme.

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Year:  2004        PMID: 15238007     DOI: 10.1021/ja036123b

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  20 in total

1.  Successful application of the DBLOC method to the hydroxylation of camphor by cytochrome p450.

Authors:  Steven V Jerome; Thomas F Hughes; Richard A Friesner
Journal:  Protein Sci       Date:  2015-12-15       Impact factor: 6.725

Review 2.  Integrated Modeling Program, Applied Chemical Theory (IMPACT).

Authors:  Jay L Banks; Hege S Beard; Yixiang Cao; Art E Cho; Wolfgang Damm; Ramy Farid; Anthony K Felts; Thomas A Halgren; Daniel T Mainz; Jon R Maple; Robert Murphy; Dean M Philipp; Matthew P Repasky; Linda Y Zhang; Bruce J Berne; Richard A Friesner; Emilio Gallicchio; Ronald M Levy
Journal:  J Comput Chem       Date:  2005-12       Impact factor: 3.376

3.  Ab initio quantum chemistry: methodology and applications.

Authors:  Richard A Friesner
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-03       Impact factor: 11.205

4.  Reaction pattern of photosystem II: oxidative water cleavage and protein flexibility.

Authors:  Philipp Kühn; Jörg Pieper; Olga Kaminskaya; Hann-Jörg Eckert; Ruep E Lechner; Vladimir Shuvalov; Gernot Renger
Journal:  Photosynth Res       Date:  2005-06       Impact factor: 3.573

5.  Conformational equilibrium of cytochrome P450 BM-3 complexed with N-palmitoylglycine: a replica exchange molecular dynamics study.

Authors:  Krishna Pratap Ravindranathan; Emilio Gallicchio; Richard A Friesner; Ann E McDermott; Ronald M Levy
Journal:  J Am Chem Soc       Date:  2006-05-03       Impact factor: 15.419

6.  Intermediates in dioxygen activation by methane monooxygenase: a QM/MM study.

Authors:  David Rinaldo; Dean M Philipp; Stephen J Lippard; Richard A Friesner
Journal:  J Am Chem Soc       Date:  2007-02-28       Impact factor: 15.419

7.  The effect of heme environment on the hydrogen abstraction reaction of camphor in P450cam catalysis: a QM/MM study.

Authors:  Ahmet Altun; Victor Guallar; Richard A Friesner; Sason Shaik; Walter Thiel
Journal:  J Am Chem Soc       Date:  2006-03-29       Impact factor: 15.419

Review 8.  Photosystem II: structure and mechanism of the water:plastoquinone oxidoreductase.

Authors:  Jan Kern; Gernot Renger
Journal:  Photosynth Res       Date:  2007-07-17       Impact factor: 3.573

Review 9.  Oxidative photosynthetic water splitting: energetics, kinetics and mechanism.

Authors:  Gernot Renger
Journal:  Photosynth Res       Date:  2007-07-24       Impact factor: 3.573

10.  Selectivity-Determining Steps in O2 Reduction Catalyzed by Iron(tetramesitylporphyrin).

Authors:  Anna C Brezny; Samantha I Johnson; Simone Raugei; James M Mayer
Journal:  J Am Chem Soc       Date:  2020-02-20       Impact factor: 15.419

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