Literature DB >> 16841211

Transition metal spin state energetics and noninnocent systems: challenges for DFT in the bioinorganic arena.

Abhik Ghosh1.   

Abstract

Although density functional theory (DFT) provides a generally good description of transition metal systems, we have identified several cases, involving Fe(III) porphyrins and related systems, where common functionals fail to correctly describe the energetics of the different low-lying spin states. The question of metal- versus ligand-centered oxidation in high-valent transition metal complexes is also a challenging one for DFT calculations, as I have tried to illustrate with examples from among porphyrin, corrole, biliverdine, and NO complexes. In a number of cases, I have compared results obtained with different exchange-correlation functionals; in addition, I have added a discussion on the relative performance of pure versus hybrid functionals. Finally, I have offered some thoughts on the role that traditional wavefunction-based ab initio methods, now essentially absent from the bioinorganic arena, might play in the future.

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Year:  2006        PMID: 16841211     DOI: 10.1007/s00775-006-0135-4

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  52 in total

1.  Theoretical modeling of putative Ni(III)--F(430) intermediates of methylcoenzyme M reductase.

Authors:  T Wondimagegn; A Ghosh
Journal:  J Am Chem Soc       Date:  2001-02-21       Impact factor: 15.419

2.  The geometric and electronic structure of [(cyclam-acetato)Fe(N)]+: a genuine iron(v) species with a ground-state spin S = 1/2.

Authors:  Núria Aliaga-Alcalde; Serena DeBeer George; Bernd Mienert; Eckhard Bill; Karl Wieghardt; Frank Neese
Journal:  Angew Chem Int Ed Engl       Date:  2005-05-06       Impact factor: 15.336

3.  A localized orbital analysis of the thermochemical errors in hybrid density functional theory: achieving chemical accuracy via a simple empirical correction scheme.

Authors:  Richard A Friesner; Eric H Knoll; Yixiang Cao
Journal:  J Chem Phys       Date:  2006-09-28       Impact factor: 3.488

4.  Spin-dependent mechanism for diatomic ligand binding to heme.

Authors:  Stefan Franzen
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-11       Impact factor: 11.205

5.  "True" iron(V) and iron(VI) porphyrins: a first theoretical exploration.

Authors:  Abhishek Dey; Abhik Ghosh
Journal:  J Am Chem Soc       Date:  2002-04-03       Impact factor: 15.419

6.  Biliverdine-based metalloradicals: sterically enhanced noninnocence.

Authors:  Ingar Wasbotten; Abhik Ghosh
Journal:  Inorg Chem       Date:  2006-06-26       Impact factor: 5.165

7.  Iron(III)-nitro porphyrins: theoretical exploration of a unique class of reactive molecules.

Authors:  Jeanet Conradie; Abhik Ghosh
Journal:  Inorg Chem       Date:  2006-06-26       Impact factor: 5.165

8.  Toward modeling H-NOX domains: a DFT study of heme-NO complexes as hydrogen bond acceptors.

Authors:  Espen Tangen; Anders Svadberg; Abhik Ghosh
Journal:  Inorg Chem       Date:  2005-10-31       Impact factor: 5.165

9.  Structural, spectroscopic, and computational study of an octahedral, non-heme [Fe-NO](6-8) Series: [Fe(NO)(cyclam-ac)]2+/+/0.

Authors:  Ricardo García Serres; Craig A Grapperhaus; Eberhard Bothe; Eckhard Bill; Thomas Weyhermüller; Frank Neese; Karl Wieghardt
Journal:  J Am Chem Soc       Date:  2004-04-28       Impact factor: 15.419

Review 10.  High-valent iron in chemical and biological oxidations.

Authors:  John T Groves
Journal:  J Inorg Biochem       Date:  2006-03-03       Impact factor: 4.155

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  20 in total

1.  Probing heme vibrational anisotropy: an imidazole orientation effect?

Authors:  Qian Peng; Ming Li; Chuanjiang Hu; Jeffrey W Pavlik; Allen G Oliver; E Ercan Alp; Michael Y Hu; Jiyong Zhao; J Timothy Sage; W Robert Scheidt
Journal:  Inorg Chem       Date:  2013-09-10       Impact factor: 5.165

2.  Differential sensing of protein influences by NO and CO vibrations in heme adducts.

Authors:  Mohammed Ibrahim; Changliang Xu; Thomas G Spiro
Journal:  J Am Chem Soc       Date:  2006-12-27       Impact factor: 15.419

3.  Spin coupling in Roussin's red and black salts.

Authors:  Kathrin H Hopmann; Louis Noodleman; Abhik Ghosh
Journal:  Chemistry       Date:  2010-09-10       Impact factor: 5.236

4.  Probing vibrational anisotropy with nuclear resonance vibrational spectroscopy.

Authors:  Jeffrey W Pavlik; Alexander Barabanschikov; Allen G Oliver; E Ercan Alp; Wolfgang Sturhahn; Jiyong Zhao; J Timothy Sage; W Robert Scheidt
Journal:  Angew Chem Int Ed Engl       Date:  2010-06-14       Impact factor: 15.336

5.  Mechanistic basis for high stereoselectivity and broad substrate scope in the (salen)Co(III)-catalyzed hydrolytic kinetic resolution.

Authors:  David D Ford; Lars P C Nielsen; Stephan J Zuend; Charles B Musgrave; Eric N Jacobsen
Journal:  J Am Chem Soc       Date:  2013-10-07       Impact factor: 15.419

6.  Fe L- and K-edge XAS of low-spin ferric corrole: bonding and reactivity relative to low-spin ferric porphyrin.

Authors:  Rosalie K Hocking; Serena DeBeer George; Zeev Gross; F Ann Walker; Keith O Hodgson; Britt Hedman; Edward I Solomon
Journal:  Inorg Chem       Date:  2009-02-16       Impact factor: 5.165

7.  CO, NO and O2 as Vibrational Probes of Heme Protein Interactions.

Authors:  Thomas G Spiro; Alexandra V Soldatova; Gurusamy Balakrishnan
Journal:  Coord Chem Rev       Date:  2012-06-06       Impact factor: 22.315

8.  Density functional theory calculations on Mössbauer parameters of nonheme iron nitrosyls.

Authors:  Kathrin H Hopmann; Abhik Ghosh; Louis Noodleman
Journal:  Inorg Chem       Date:  2009-10-05       Impact factor: 5.165

9.  Predicting Nuclear Resonance Vibrational Spectra of [Fe(OEP)(NO)].

Authors:  Qian Peng; Jeffrey W Pavlik; W Robert Scheidt; Olaf Wiest
Journal:  J Chem Theory Comput       Date:  2011-11-29       Impact factor: 6.006

10.  The secondary coordination sphere and axial ligand effects on oxygen reduction reaction by iron porphyrins: a DFT computational study.

Authors:  Takehiro Ohta; Perumandla Nagaraju; Jin-Gang Liu; Takashi Ogura; Yoshinori Naruta
Journal:  J Biol Inorg Chem       Date:  2016-08-09       Impact factor: 3.358

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