Literature DB >> 15038756

Quantum mechanical/molecular mechanical investigation of the mechanism of C-H hydroxylation of camphor by cytochrome P450cam: theory supports a two-state rebound mechanism.

Jan C Schöneboom1, Shimrit Cohen, Hai Lin, Sason Shaik, Walter Thiel.   

Abstract

The stereospecific cytochrome P450-catalyzed hydroxylation of the C(5)-H((5-exo)) bond in camphor has been studied theoretically by a combined quantum mechanical/molecular mechanical (QM/MM) approach. Density functional theory is employed to treat the electronic structure of the active site (40-100 atoms), while the protein and solvent environment (ca. 24,000 atoms) is described by the CHARMM force field. The calculated energy profile of the hydrogen-abstraction oxygen-rebound mechanism indicates that the reaction takes place in two spin states (doublet and quartet), as has been suggested earlier on the basis of calculations on simpler models ("two-state reactivity"). While the reaction on the doublet potential energy surface is nonsynchronous, yet effectively concerted, the quartet pathway is truly stepwise, including formation of a distinct intermediate substrate radical and a hydroxo-iron complex. Comparative calculations in the gas phase demonstrate the effect of the protein environment on the geometry and relative stability of intermediates (in terms of spin states and redox electromers) through steric constraints and electronic polarization.

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Year:  2004        PMID: 15038756     DOI: 10.1021/ja039847w

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  30 in total

1.  Successful application of the DBLOC method to the hydroxylation of camphor by cytochrome p450.

Authors:  Steven V Jerome; Thomas F Hughes; Richard A Friesner
Journal:  Protein Sci       Date:  2015-12-15       Impact factor: 6.725

2.  Oxoiron(IV) porphyrin pi-cation radical complexes with a chameleon behavior in cytochrome P450 model reactions.

Authors:  Woon Ju Song; Yon Ok Ryu; Rita Song; Wonwoo Nam
Journal:  J Biol Inorg Chem       Date:  2005-04-13       Impact factor: 3.358

3.  The effect of heme environment on the hydrogen abstraction reaction of camphor in P450cam catalysis: a QM/MM study.

Authors:  Ahmet Altun; Victor Guallar; Richard A Friesner; Sason Shaik; Walter Thiel
Journal:  J Am Chem Soc       Date:  2006-03-29       Impact factor: 15.419

4.  The intrinsic axial ligand effect on propene oxidation by horseradish peroxidase versus cytochrome P450 enzymes.

Authors:  Devesh Kumar; Sam P de Visser; Pankaz K Sharma; Etienne Derat; Sason Shaik
Journal:  J Biol Inorg Chem       Date:  2005-02-19       Impact factor: 3.358

5.  Electrostatic environment of hemes in proteins: pK(a)s of hydroxyl ligands.

Authors:  Yifan Song; Junjun Mao; M R Gunner
Journal:  Biochemistry       Date:  2006-07-04       Impact factor: 3.162

6.  Manganese catalysts for C-H activation: an experimental/theoretical study identifies the stereoelectronic factor that controls the switch between hydroxylation and desaturation pathways.

Authors:  Jonathan F Hull; David Balcells; Effiette L O Sauer; Christophe Raynaud; Gary W Brudvig; Robert H Crabtree; Odile Eisenstein
Journal:  J Am Chem Soc       Date:  2010-06-09       Impact factor: 15.419

7.  X-ray absorption spectroscopy of chloroperoxidase compound I: Insight into the reactive intermediate of P450 chemistry.

Authors:  Kari L Stone; Rachel K Behan; Michael T Green
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-07       Impact factor: 11.205

Review 8.  Progress in ab initio QM/MM free-energy simulations of electrostatic energies in proteins: accelerated QM/MM studies of pKa, redox reactions and solvation free energies.

Authors:  Shina C L Kamerlin; Maciej Haranczyk; Arieh Warshel
Journal:  J Phys Chem B       Date:  2009-02-05       Impact factor: 2.991

9.  Replacement of tyrosine residues by phenylalanine in cytochrome P450cam alters the formation of Cpd II-like species in reactions with artificial oxidants.

Authors:  Tatyana Spolitak; John H Dawson; David P Ballou
Journal:  J Biol Inorg Chem       Date:  2008-05       Impact factor: 3.358

10.  How Do Perfluorinated Alkanoic Acids Elicit Cytochrome P450 to Catalyze Methane Hydroxylation? An MD and QM/MM Study.

Authors:  Chunsen Li; Sason Shaik
Journal:  RSC Adv       Date:  2013-03-07       Impact factor: 3.361

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