Literature DB >> 16511330

A preliminary neutron diffraction study of rasburicase, a recombinant urate oxidase enzyme, complexed with 8-azaxanthin.

Monika Budayova-Spano1, Françoise Bonneté, Natalie Ferté, Mohamed El Hajji, Flora Meilleur, Matthew Paul Blakeley, Bertrand Castro.   

Abstract

Crystallization and preliminary neutron diffraction measurements of rasburicase, a recombinant urate oxidase enzyme expressed by a genetically modified Saccharomyces cerevisiae strain, complexed with a purine-type inhibitor (8-azaxanthin) are reported. Neutron Laue diffraction data were collected to 2.1 A resolution using the LADI instrument from a crystal (grown in D2O) with volume 1.8 mm3. The aim of this neutron diffraction study is to determine the protonation states of the inhibitor and residues within the active site. This will lead to improved comprehension of the enzymatic mechanism of this important enzyme, which is used as a protein drug to reduce toxic uric acid accumulation during chemotherapy. This paper illustrates the high quality of the neutron diffraction data collected, which are suitable for high-resolution structural analysis. In comparison with other neutron protein crystallography studies to date in which a hydrogenated protein has been used, the volume of the crystal was relatively small and yet the data still extend to high resolution. Furthermore, urate oxidase has one of the largest primitive unit-cell volumes (space group I222, unit-cell parameters a = 80, b = 96, c = 106 A) and molecular weights (135 kDa for the homotetramer) so far successfully studied with neutrons.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 16511330      PMCID: PMC2197182          DOI: 10.1107/S1744309106006439

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  12 in total

1.  Neutron diffraction studies on rubredoxin from Pyrococcus furiosus.

Authors:  Robert Bau
Journal:  J Synchrotron Radiat       Date:  2003-11-28       Impact factor: 2.616

2.  A preliminary time-of-flight neutron diffraction study of Streptomyces rubiginosus D-xylose isomerase.

Authors:  B Leif Hanson; Paul Langan; Amy K Katz; Xinmin Li; Joel M Harp; Jenny P Glusker; Benno P Schoenborn; Gerard J Bunick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-01-23

3.  Urate oxidase from Aspergillus flavus: new crystal-packing contacts in relation to the content of the active site.

Authors:  Pascal Retailleau; Nathalie Colloc'h; Denis Vivarès; Françoise Bonneté; Bertrand Castro; Mohamed El Hajji; Thierry Prangé
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-02-24

4.  Image plate detectors for macromolecular neutron diffractometry.

Authors:  F Cipriani; F Dauvergne; A Gabriel; C Wilkinson; M S Lehmann
Journal:  Biophys Chem       Date:  1994-12       Impact factor: 2.352

5.  Crystal structure of the protein drug urate oxidase-inhibitor complex at 2.05 A resolution.

Authors:  N Colloc'h; M el Hajji; B Bachet; G L'Hermite; M Schiltz; T Prangé; B Castro; J P Mornon
Journal:  Nat Struct Biol       Date:  1997-11

6.  X-ray scattering studies of Aspergillus flavus urate oxidase: towards a better understanding of PEG effects on the crystallization of large proteins.

Authors:  D Vivarès; F Bonneté
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-02-21

7.  Preliminary neutron diffraction studies of Escherichia coli dihydrofolate reductase bound to the anticancer drug methotrexate.

Authors:  Brad C Bennett; Flora Meilleur; Dean A A Myles; Elizabeth E Howell; Chris G Dealwis
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-04-20

8.  Kinetic mechanism and cofactor content of soybean root nodule urate oxidase.

Authors:  K Kahn; P A Tipton
Journal:  Biochemistry       Date:  1997-04-22       Impact factor: 3.162

9.  Complexed and ligand-free high-resolution structures of urate oxidase (Uox) from Aspergillus flavus: a reassignment of the active-site binding mode.

Authors:  Pascal Retailleau; Nathalie Colloc'h; Denis Vivarès; Françoise Bonneté; Bertrand Castro; Mohamed El-Hajji; Jean Paul Mornon; Gérald Monard; Thierry Prangé
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-02-25

10.  Crystallization of a large single crystal of cubic insulin for neutron protein crystallography.

Authors:  M Maeda; T Chatake; I Tanaka; A Ostermann; N Niimura
Journal:  J Synchrotron Radiat       Date:  2003-11-28       Impact factor: 2.616

View more
  7 in total

Review 1.  Neutron Laue macromolecular crystallography.

Authors:  Flora Meilleur; Dean A A Myles; Matthew P Blakeley
Journal:  Eur Biophys J       Date:  2006-08-03       Impact factor: 1.733

2.  Preliminary time-of-flight neutron diffraction study on diisopropyl fluorophosphatase (DFPase) from Loligo vulgaris.

Authors:  Marc-Michael Blum; Alexander Koglin; Heinz Rüterjans; Benno Schoenborn; Paul Langan; Julian C-H Chen
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-12-22

3.  A preliminary neutron crystallographic study of an A-DNA crystal.

Authors:  Ricardo M F Leal; Susana C M Teixeira; Matthew P Blakeley; Edward P Mitchell; V Trevor Forsyth
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-02-12

Review 4.  Large crystal growth by thermal control allows combined X-ray and neutron crystallographic studies to elucidate the protonation states in Aspergillus flavus urate oxidase.

Authors:  E Oksanen; M P Blakeley; F Bonneté; M T Dauvergne; F Dauvergne; M Budayova-Spano
Journal:  J R Soc Interface       Date:  2009-07-08       Impact factor: 4.118

5.  A preliminary neutron crystallographic study of thaumatin.

Authors:  Susana C M Teixeira; Matthew P Blakeley; Ricardo M F Leal; Edward P Mitchell; V Trevor Forsyth
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-04-05

Review 6.  Neutron crystallography: opportunities, challenges, and limitations.

Authors:  Matthew P Blakeley; Paul Langan; Nobuo Niimura; Alberto Podjarny
Journal:  Curr Opin Struct Biol       Date:  2008-08-07       Impact factor: 6.809

7.  The neutron structure of urate oxidase resolves a long-standing mechanistic conundrum and reveals unexpected changes in protonation.

Authors:  Esko Oksanen; Matthew P Blakeley; Mohamed El-Hajji; Ulf Ryde; Monika Budayova-Spano
Journal:  PLoS One       Date:  2014-01-23       Impact factor: 3.240

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.