Literature DB >> 16511228

Crystallization Optimum Solubility Screening: using crystallization results to identify the optimal buffer for protein crystal formation.

Bernard Collins1, Raymond C Stevens, Rebecca Page.   

Abstract

An optimal solubility screen is described that uses the results of crystallization trials to identify buffers that improve protein solubility and, in turn, crystallization success. This screen is useful not only for standard crystallization experiments, but also can easily be implemented into any high-throughput structure-determination pipeline. As a proof of principle, the predicted novel-fold protein AF2059 from Archaeoglobus fulgidus, which was known to precipitate in most buffers and particularly during concentration experiments, was selected. Using the crystallization results of 192 independent crystallization trials, it was possible to identify a buffer containing 100 mM CHES pH 9.25 that significantly improves its solubility. After transferring AF2059 into this ;optimum-solubility' buffer, the protein was rescreened for crystal formation against these same 192 conditions. Instead of extensive precipitation, as observed initially, it was found that 24 separate conditions produced crystals and the exchange of AF2059 into CHES buffer significantly improved crystallization success. Fine-screen optimization of these conditions led to the production of a crystal suitable for high-resolution (2.2 A) structure determination.

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Year:  2005        PMID: 16511228      PMCID: PMC1978149          DOI: 10.1107/S1744309105035244

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  7 in total

Review 1.  Light scattering as a diagnostic for protein crystal growth--a practical approach.

Authors:  W William Wilson
Journal:  J Struct Biol       Date:  2003-04       Impact factor: 2.867

2.  Crystal structure of a PIN (PilT N-terminus) domain (AF0591) from Archaeoglobus fulgidus at 1.90 A resolution.

Authors:  Inna Levin; Robert Schwarzenbacher; Rebecca Page; Polat Abdubek; Eileen Ambing; Tanya Biorac; Linda S Brinen; Jamison Campbell; Jaume M Canaves; Hsiu-Ju Chiu; Xiaoping Dai; Ashley M Deacon; Mike DiDonato; Marc-André Elsliger; Ross Floyd; Adam Godzik; Carina Grittini; Slawomir K Grzechnik; Eric Hampton; Lukasz Jaroszewski; Cathy Karlak; Heath E Klock; Eric Koesema; John S Kovarik; Andreas Kreusch; Peter Kuhn; Scott A Lesley; Daniel McMullan; Timothy M McPhillips; Mitchell D Miller; Andrew Morse; Kin Moy; Jie Ouyang; Kevin Quijano; Ron Reyes; Fred Rezezadeh; Alyssa Robb; Eric Sims; Glen Spraggon; Raymond C Stevens; Henry van den Bedem; Jeff Velasquez; Juli Vincent; Frank von Delft; Xianhong Wang; Bill West; Guenter Wolf; Qingping Xu; Keith O Hodgson; John Wooley; Ian A Wilson
Journal:  Proteins       Date:  2004-08-01

3.  Crystallizing proteins - a rational approach?

Authors:  A D'Arcy
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-07-01

4.  Optimum solubility (OS) screening: an efficient method to optimize buffer conditions for homogeneity and crystallization of proteins.

Authors:  Jarmila Jancarik; Ramona Pufan; Connie Hong; Sung Hou Kim; Rosalind Kim
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-08-26

Review 5.  Crystallization data mining in structural genomics: using positive and negative results to optimize protein crystallization screens.

Authors:  Rebecca Page; Raymond C Stevens
Journal:  Methods       Date:  2004-11       Impact factor: 3.608

6.  Shotgun crystallization strategy for structural genomics: an optimized two-tiered crystallization screen against the Thermotoga maritima proteome.

Authors:  Rebecca Page; Slawomir K Grzechnik; Jaume M Canaves; Glen Spraggon; Andreas Kreusch; Peter Kuhn; Raymond C Stevens; Scott A Lesley
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2003-05-23

7.  Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline.

Authors:  Scott A Lesley; Peter Kuhn; Adam Godzik; Ashley M Deacon; Irimpan Mathews; Andreas Kreusch; Glen Spraggon; Heath E Klock; Daniel McMullan; Tanya Shin; Juli Vincent; Alyssa Robb; Linda S Brinen; Mitchell D Miller; Timothy M McPhillips; Mark A Miller; Daniel Scheibe; Jaume M Canaves; Chittibabu Guda; Lukasz Jaroszewski; Thomas L Selby; Marc-Andre Elsliger; John Wooley; Susan S Taylor; Keith O Hodgson; Ian A Wilson; Peter G Schultz; Raymond C Stevens
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-22       Impact factor: 11.205

  7 in total
  7 in total

1.  Formulation screening by differential scanning fluorimetry: how often does it work?

Authors:  Marko Ristic; Nicholas Rosa; Shane A Seabrook; Janet Newman
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-09-23       Impact factor: 1.056

Review 2.  The impact of extremophiles on structural genomics (and vice versa).

Authors:  Francis E Jenney; Michael W W Adams
Journal:  Extremophiles       Date:  2007-06-13       Impact factor: 2.395

3.  The crystallization of apo-form UMP kinase from Xanthomonas campestris is significantly improved in a strong magnetic field.

Authors:  Jhe-Le Tu; Ko-Hsin Chin; Andrew H-J Wang; Shan-Ho Chou
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-04-20

4.  A strategy for selecting the pH of protein solutions to enhance crystallization.

Authors:  Chen Yan Zhang; Zi Qing Wu; Da Chuan Yin; Bo Ru Zhou; Yun Zhu Guo; Hui Meng Lu; Ren Bin Zhou; Peng Shang
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-06-29

Review 5.  Optimization of crystallization conditions for biological macromolecules.

Authors:  Alexander McPherson; Bob Cudney
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-10-31       Impact factor: 1.056

6.  On the need for an international effort to capture, share and use crystallization screening data.

Authors:  Janet Newman; Evan E Bolton; Jochen Müller-Dieckmann; Vincent J Fazio; D Travis Gallagher; David Lovell; Joseph R Luft; Thomas S Peat; David Ratcliffe; Roger A Sayle; Edward H Snell; Kerry Taylor; Pascal Vallotton; Sameer Velanker; Frank von Delft
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-02-15

Review 7.  Crystallization screening: the influence of history on current practice.

Authors:  Joseph R Luft; Janet Newman; Edward H Snell
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-06-27       Impact factor: 1.056

  7 in total

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