Literature DB >> 26457531

Formulation screening by differential scanning fluorimetry: how often does it work?

Marko Ristic1, Nicholas Rosa1, Shane A Seabrook1, Janet Newman1.   

Abstract

There is strong evidence to suggest that a protein sample needs to be well folded and uniform in order to form protein crystals, and it is accepted knowledge that the formulation can have profound effects on the behaviour of the protein sample. The technique of differential scanning fluorimetry (DSF) is a very accessible method to determine protein stability as a function of the formulation chemistry and the temperature. A diverse set of 252 soluble protein samples was subjected to a standard formulation-screening protocol using DSF. Automated analysis of the DSF results suggest that in over 35% of cases buffer screening significantly increases the stability of the protein sample. Of the 28 standard formulations tested, three stood out as being statistically better than the others: these included a formulation containing the buffer citrate, long known to be `protein friendly'; bis-tris and ADA were also identified as being very useful buffers in protein formulations.

Entities:  

Keywords:  Thermofluor; buffer; differential scanning fluorimetry; formulation; protein stability

Mesh:

Substances:

Year:  2015        PMID: 26457531      PMCID: PMC4601604          DOI: 10.1107/S2053230X15012662

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  12 in total

1.  Optimum solubility (OS) screening: an efficient method to optimize buffer conditions for homogeneity and crystallization of proteins.

Authors:  Jarmila Jancarik; Ramona Pufan; Connie Hong; Sung Hou Kim; Rosalind Kim
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-08-26

2.  Protein isoelectric point as a predictor for increased crystallization screening efficiency.

Authors:  Katherine A Kantardjieff; Bernhard Rupp
Journal:  Bioinformatics       Date:  2004-02-10       Impact factor: 6.937

3.  A thermal stability assay can help to estimate the crystallization likelihood of biological samples.

Authors:  Florine Dupeux; Martin Röwer; Gael Seroul; Delphine Blot; José A Márquez
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-10-18

4.  Thermofluor-based high-throughput stability optimization of proteins for structural studies.

Authors:  Ulrika B Ericsson; B Martin Hallberg; George T Detitta; Niek Dekker; Pär Nordlund
Journal:  Anal Biochem       Date:  2006-08-10       Impact factor: 3.365

5.  Crystallization Optimum Solubility Screening: using crystallization results to identify the optimal buffer for protein crystal formation.

Authors:  Bernard Collins; Raymond C Stevens; Rebecca Page
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-11-05

6.  A strategy for selecting the pH of protein solutions to enhance crystallization.

Authors:  Chen Yan Zhang; Zi Qing Wu; Da Chuan Yin; Bo Ru Zhou; Yun Zhu Guo; Hui Meng Lu; Ren Bin Zhou; Peng Shang
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-06-29

Review 7.  Optimization of protein purification and characterization using Thermofluor screens.

Authors:  Stephane Boivin; Sandra Kozak; Rob Meijers
Journal:  Protein Expr Purif       Date:  2013-08-12       Impact factor: 1.650

8.  Use of dynamic light scattering to assess crystallizability of macromolecules and macromolecular assemblies.

Authors:  A R Ferré-D'Amaré; S K Burley
Journal:  Structure       Date:  1994-05-15       Impact factor: 5.006

9.  Understanding the physical properties that control protein crystallization by analysis of large-scale experimental data.

Authors:  W Nicholson Price; Yang Chen; Samuel K Handelman; Helen Neely; Philip Manor; Richard Karlin; Rajesh Nair; Jinfeng Liu; Michael Baran; John Everett; Saichiu N Tong; Farhad Forouhar; Swarup S Swaminathan; Thomas Acton; Rong Xiao; Joseph R Luft; Angela Lauricella; George T DeTitta; Burkhard Rost; Gaetano T Montelione; John F Hunt
Journal:  Nat Biotechnol       Date:  2009-01       Impact factor: 54.908

10.  Using isoelectric point to determine the pH for initial protein crystallization trials.

Authors:  Jobie Kirkwood; David Hargreaves; Simon O'Keefe; Julie Wilson
Journal:  Bioinformatics       Date:  2015-01-07       Impact factor: 6.937

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  4 in total

1.  Structural and biophysical analyses of the skeletal dihydropyridine receptor β subunit β1a reveal critical roles of domain interactions for stability.

Authors:  Nicole C Norris; Soumya Joseph; Shouvik Aditya; Yamuna Karunasekara; Philip G Board; Angela F Dulhunty; Aaron J Oakley; Marco G Casarotto
Journal:  J Biol Chem       Date:  2017-03-28       Impact factor: 5.157

2.  Insect Cells for High-Yield Production of SARS-CoV-2 Spike Protein: Building a Virosome-Based COVID-19 Vaccine Candidate.

Authors:  Bárbara Fernandes; Rute Castro; Farien Bhoelan; Denzel Bemelman; Ricardo A Gomes; Júlia Costa; Patrícia Gomes-Alves; Toon Stegmann; Mario Amacker; Paula M Alves; Sylvain Fleury; António Roldão
Journal:  Pharmaceutics       Date:  2022-04-13       Impact factor: 6.525

Review 3.  Biophysical, Biochemical, and Cell Based Approaches Used to Decipher the Role of Carbonic Anhydrases in Cancer and to Evaluate the Potency of Targeted Inhibitors.

Authors:  Mam Y Mboge; Anusha Kota; Robert McKenna; Susan C Frost
Journal:  Int J Med Chem       Date:  2018-07-16

Review 4.  Protein stability: a crystallographer's perspective.

Authors:  Marc C Deller; Leopold Kong; Bernhard Rupp
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2016-01-26       Impact factor: 1.056

  4 in total

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