Literature DB >> 12369843

GTPase activation of elongation factors Tu and G on the ribosome.

Dagmar Mohr1, Wolfgang Wintermeyer, Marina V Rodnina.   

Abstract

The GTPase activity of elongation factors Tu and G is stimulated by the ribosome. The factor binding site is located on the 50S ribosomal subunit and comprises proteins L7/12, L10, L11, the L11-binding region of 23S rRNA, and the sarcin-ricin loop of 23S rRNA. The role of these ribosomal elements in factor binding, GTPase activation, or functions in tRNA binding and translocation, and their relative contributions, is not known. By comparing ribosomes depleted of L7/12 and reconstituted ribosomes, we show that, for both factors, interactions with L7/12 and with other ribosomal residues contribute about equally and additively to GTPase activation, resulting in an overall 10(7)-fold stimulation. Removal of L7/12 has little effect on factor binding to the ribosome. Effects on other factor-dependent functions, i.e., A-site binding of aminoacyl-tRNA and translocation, are fully explained by the inhibition of GTP hydrolysis. Based on these results, we propose that L7/12 stimulates the GTPase activity of both factors by inducing the catalytically active conformation of the G domain. This effect appears to be augmented by interactions of other structural elements of the large ribosomal subunit with the switch regions of the factors.

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Year:  2002        PMID: 12369843     DOI: 10.1021/bi026301y

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  65 in total

1.  Archaeal ribosomal stalk protein interacts with translation factors in a nucleotide-independent manner via its conserved C terminus.

Authors:  Naoko Nomura; Takayoshi Honda; Kentaro Baba; Takao Naganuma; Takehito Tanzawa; Fumio Arisaka; Masanori Noda; Susumu Uchiyama; Isao Tanaka; Min Yao; Toshio Uchiumi
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-21       Impact factor: 11.205

2.  A conserved proline switch on the ribosome facilitates the recruitment and binding of trGTPases.

Authors:  Li Wang; Fang Yang; Dejiu Zhang; Zhi Chen; Rui-Ming Xu; Knud H Nierhaus; Weimin Gong; Yan Qin
Journal:  Nat Struct Mol Biol       Date:  2012-03-11       Impact factor: 15.369

3.  Conformational sampling of aminoacyl-tRNA during selection on the bacterial ribosome.

Authors:  Peter Geggier; Richa Dave; Michael B Feldman; Daniel S Terry; Roger B Altman; James B Munro; Scott C Blanchard
Journal:  J Mol Biol       Date:  2010-04-29       Impact factor: 5.469

4.  Atomic mutagenesis reveals A2660 of 23S ribosomal RNA as key to EF-G GTPase activation.

Authors:  Nina Clementi; Anna Chirkova; Barbara Puffer; Ronald Micura; Norbert Polacek
Journal:  Nat Chem Biol       Date:  2010-03-28       Impact factor: 15.040

5.  Pentameric organization of the ribosomal stalk accelerates recruitment of ricin a chain to the ribosome for depurination.

Authors:  Xiao-Ping Li; Przemyslaw Grela; Dawid Krokowski; Marek Tchórzewski; Nilgun E Tumer
Journal:  J Biol Chem       Date:  2010-10-25       Impact factor: 5.157

6.  Distortion of tRNA upon near-cognate codon recognition on the ribosome.

Authors:  Joerg Mittelstaet; Andrey L Konevega; Marina V Rodnina
Journal:  J Biol Chem       Date:  2011-01-06       Impact factor: 5.157

7.  RNA chaperone activity of large ribosomal subunit proteins from Escherichia coli.

Authors:  Katharina Semrad; Rachel Green; Renée Schroeder
Journal:  RNA       Date:  2004-11-03       Impact factor: 4.942

8.  The hybrid state of tRNA binding is an authentic translation elongation intermediate.

Authors:  Silke Dorner; Julie L Brunelle; Divya Sharma; Rachel Green
Journal:  Nat Struct Mol Biol       Date:  2006-02-26       Impact factor: 15.369

9.  The process of mRNA-tRNA translocation.

Authors:  Joachim Frank; Haixiao Gao; Jayati Sengupta; Ning Gao; Derek J Taylor
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-14       Impact factor: 11.205

Review 10.  Targeting ricin to the ribosome.

Authors:  Kerrie L May; Qing Yan; Nilgun E Tumer
Journal:  Toxicon       Date:  2013-02-20       Impact factor: 3.033

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