Literature DB >> 16492771

Chromatin remodeling by nucleosome disassembly in vitro.

Yahli Lorch1, Barbara Maier-Davis, Roger D Kornberg.   

Abstract

The RSC chromatin-remodeling complex completely disassembles a nucleosome in the presence of the histone chaperone Nap1 and ATP. Disassembly occurs in a stepwise manner, with the removal of H2A/H2B dimers, followed by the rest of the histones and the release of naked DNA. RSC and related chromatin-remodeling complexes may be responsible for the removal of promoter nucleosomes during transcriptional activation in vivo.

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Year:  2006        PMID： 16492771      PMCID： PMC1413907          DOI： 10.1073/pnas.0511050103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  36 in total

1.  Dynamic interaction of DNA damage checkpoint protein Rad53 with chromatin assembly factor Asf1.

Authors:  A Emili; D M Schieltz; J R Yates; L H Hartwell
Journal:  Mol Cell       Date:  2001-01       Impact factor: 17.970

2.  RSC unravels the nucleosome.

Authors:  Y Lorch; M Zhang; R D Kornberg
Journal:  Mol Cell       Date:  2001-01       Impact factor: 17.970

3.  p300-mediated acetylation facilitates the transfer of histone H2A-H2B dimers from nucleosomes to a histone chaperone.

Authors:  T Ito; T Ikehara; T Nakagawa; W L Kraus; M Muramatsu
Journal:  Genes Dev       Date:  2000-08-01       Impact factor: 11.361

4.  Octamer transfer and creation of stably remodeled nucleosomes by human SWI-SNF and its isolated ATPases.

Authors:  M L Phelan; G R Schnitzler; R E Kingston
Journal:  Mol Cell Biol       Date:  2000-09       Impact factor: 4.272

5.  Removal of promoter nucleosomes by disassembly rather than sliding in vivo.

Authors:  Hinrich Boeger; Joachim Griesenbeck; J Seth Strattan; Roger D Kornberg
Journal:  Mol Cell       Date:  2004-06-04       Impact factor: 17.970

6.  The absence of the yeast chromatin assembly factor Asf1 increases genomic instability and sister chromatid exchange.

Authors:  Félix Prado; Felipe Cortés-Ledesma; Andrés Aguilera
Journal:  EMBO Rep       Date:  2004-04-08       Impact factor: 8.807

7.  Isolation and assay of the RSC chromatin-remodeling complex from Saccharomyces cerevisiae.

Authors:  Yahli Lorch; Roger D Kornberg
Journal:  Methods Enzymol       Date:  2004       Impact factor: 1.600

8.  The RCAF complex mediates chromatin assembly during DNA replication and repair.

Authors:  J K Tyler; C R Adams; S R Chen; R Kobayashi; R T Kamakaka; J T Kadonaga
Journal:  Nature       Date:  1999-12-02       Impact factor: 49.962

9.  Histone release during transcription: displacement of the two H2A-H2B dimers in the nucleosome is dependent on different levels of transcription-induced positive stress.

Authors:  Vladislav Levchenko; Beverly Jackson; Vaughn Jackson
Journal:  Biochemistry       Date:  2005-04-12       Impact factor: 3.162

10.  Chromatin disassembly mediated by the histone chaperone Asf1 is essential for transcriptional activation of the yeast PHO5 and PHO8 genes.

Authors:  Melissa W Adkins; Susan R Howar; Jessica K Tyler
Journal:  Mol Cell       Date:  2004-06-04       Impact factor: 17.970
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  109 in total

Review 1.  CHD chromatin remodelers and the transcription cycle.

Authors:  Magdalena Murawska; Alexander Brehm
Journal:  Transcription       Date:  2011-11-01

2.  Epigenome characterization at single base-pair resolution.

Authors:  Jorja G Henikoff; Jason A Belsky; Kristina Krassovsky; David M MacAlpine; Steven Henikoff
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-24       Impact factor: 11.205

3.  In vivo role for the chromatin-remodeling enzyme SWI/SNF in the removal of promoter nucleosomes by disassembly rather than sliding.

Authors:  Christopher R Brown; Changhui Mao; Elena Falkovskaia; Jason K Law; Hinrich Boeger
Journal:  J Biol Chem       Date:  2011-10-06       Impact factor: 5.157

4.  Large multimeric assemblies of nucleosome assembly protein and histones revealed by small-angle X-ray scattering and electron microscopy.

Authors:  Emily R Newman; G Geoff Kneale; Raimond B G Ravelli; Manikandan Karuppasamy; Fatemeh Karimi Nejadasl; Ian A Taylor; John E McGeehan
Journal:  J Biol Chem       Date:  2012-06-15       Impact factor: 5.157

5.  Histone density is maintained during transcription mediated by the chromatin remodeler RSC and histone chaperone NAP1 in vitro.

Authors:  Benjamin G Kuryan; Jessica Kim; Nancy Nga H Tran; Sarah R Lombardo; Swaminathan Venkatesh; Jerry L Workman; Michael Carey
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-23       Impact factor: 11.205

6.  NF-κB and BRG1 bind a distal regulatory element in the IL-3/GM-CSF locus.

Authors:  Andrea L Wurster; Patricia Precht; Michael J Pazin
Journal:  Mol Immunol       Date:  2011-08-09       Impact factor: 4.407

Review 7.  New insights into nucleosome and chromatin structure: an ordered state or a disordered affair?

Authors:  Karolin Luger; Mekonnen L Dechassa; David J Tremethick
Journal:  Nat Rev Mol Cell Biol       Date:  2012-06-22       Impact factor: 94.444

Review 8.  Mechanisms of action and regulation of ATP-dependent chromatin-remodelling complexes.

Authors:  Cedric R Clapier; Janet Iwasa; Bradley R Cairns; Craig L Peterson
Journal:  Nat Rev Mol Cell Biol       Date:  2017-05-17       Impact factor: 94.444

9.  Ccp1 Homodimer Mediates Chromatin Integrity by Antagonizing CENP-A Loading.

Authors:  Qianhua Dong; Feng-Xiang Yin; Feng Gao; Yuan Shen; Faben Zhang; Yang Li; Haijin He; Marlyn Gonzalez; Jinpu Yang; Shu Zhang; Min Su; Yu-Hang Chen; Fei Li
Journal:  Mol Cell       Date:  2016-09-22       Impact factor: 17.970

10.  Human SWI/SNF drives sequence-directed repositioning of nucleosomes on C-myc promoter DNA minicircles.

Authors:  Hillel I Sims; Jacqueline M Lane; Natalia P Ulyanova; Gavin R Schnitzler
Journal:  Biochemistry       Date:  2007-09-18       Impact factor: 3.162
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