Literature DB >> 22223048

CHD chromatin remodelers and the transcription cycle.

Magdalena Murawska1, Alexander Brehm.   

Abstract

It is well established that ATP-dependent chromatin remodelers modulate DNA access of transcription factors and RNA polymerases by "opening" or "closing" chromatin structure. However, this view is far too simplistic. Recent findings have demonstrated that these enzymes not only set the stage for the transcription machinery to act but are actively involved at every step of the transcription process. As a consequence, they affect initiation, elongation, termination and RNA processing. In this review we will use the CHD family as a paradigm to illustrate the progress that has been made in revealing these new concepts.
© 2011 Landes Bioscience

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Year:  2011        PMID: 22223048      PMCID: PMC3265784          DOI: 10.4161/trns.2.6.17840

Source DB:  PubMed          Journal:  Transcription        ISSN: 2154-1272


  107 in total

1.  CHD1 interacts with SSRP1 and depends on both its chromodomain and its ATPase/helicase-like domain for proper association with chromatin.

Authors:  D E Kelley; D G Stokes; R P Perry
Journal:  Chromosoma       Date:  1999-04       Impact factor: 4.316

2.  Ikaros DNA-binding proteins direct formation of chromatin remodeling complexes in lymphocytes.

Authors:  J Kim; S Sif; B Jones; A Jackson; J Koipally; E Heller; S Winandy; A Viel; A Sawyer; T Ikeda; R Kingston; K Georgopoulos
Journal:  Immunity       Date:  1999-03       Impact factor: 31.745

3.  The dermatomyositis-specific autoantigen Mi2 is a component of a complex containing histone deacetylase and nucleosome remodeling activities.

Authors:  Y Zhang; G LeRoy; H P Seelig; W S Lane; D Reinberg
Journal:  Cell       Date:  1998-10-16       Impact factor: 41.582

4.  Chromatin deacetylation by an ATP-dependent nucleosome remodelling complex.

Authors:  J K Tong; C A Hassig; G R Schnitzler; R E Kingston; S L Schreiber
Journal:  Nature       Date:  1998-10-29       Impact factor: 49.962

5.  Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex.

Authors:  X Nan; H H Ng; C A Johnson; C D Laherty; B M Turner; R N Eisenman; A Bird
Journal:  Nature       Date:  1998-05-28       Impact factor: 49.962

6.  A multiple subunit Mi-2 histone deacetylase from Xenopus laevis cofractionates with an associated Snf2 superfamily ATPase.

Authors:  P A Wade; P L Jones; D Vermaak; A P Wolffe
Journal:  Curr Biol       Date:  1998-07-02       Impact factor: 10.834

7.  NURD, a novel complex with both ATP-dependent chromatin-remodeling and histone deacetylase activities.

Authors:  Y Xue; J Wong; G T Moreno; M K Young; J Côté; W Wang
Journal:  Mol Cell       Date:  1998-12       Impact factor: 17.970

8.  Nucleosome assembly by a complex of CAF-1 and acetylated histones H3/H4.

Authors:  A Verreault; P D Kaufman; R Kobayashi; B Stillman
Journal:  Cell       Date:  1996-10-04       Impact factor: 41.582

9.  dMi-2, a hunchback-interacting protein that functions in polycomb repression.

Authors:  J Kehle; D Beuchle; S Treuheit; B Christen; J A Kennison; M Bienz; J Müller
Journal:  Science       Date:  1998-12-04       Impact factor: 47.728

10.  The Drosophila kismet gene is related to chromatin-remodeling factors and is required for both segmentation and segment identity.

Authors:  G Daubresse; R Deuring; L Moore; O Papoulas; I Zakrajsek; W R Waldrip; M P Scott; J A Kennison; J W Tamkun
Journal:  Development       Date:  1999-03       Impact factor: 6.868

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  37 in total

Review 1.  Therapeutic targets for neuroblastomas.

Authors:  Garrett M Brodeur; Radhika Iyer; Jamie L Croucher; Tiangang Zhuang; Mayumi Higashi; Venkatadri Kolla
Journal:  Expert Opin Ther Targets       Date:  2014-01-06       Impact factor: 6.902

2.  The tumor suppressor Chd5 is induced during neuronal differentiation in the developing mouse brain.

Authors:  Assaf Vestin; Alea A Mills
Journal:  Gene Expr Patterns       Date:  2013-10-09       Impact factor: 1.224

3.  Intrinsically disordered proteins and conformational noise: implications in cancer.

Authors:  Gita Mahmoudabadi; Krithika Rajagopalan; Robert H Getzenberg; Sridhar Hannenhalli; Govindan Rangarajan; Prakash Kulkarni
Journal:  Cell Cycle       Date:  2012-12-19       Impact factor: 4.534

Review 4.  Genetic syndromes caused by mutations in epigenetic genes.

Authors:  María Berdasco; Manel Esteller
Journal:  Hum Genet       Date:  2013-01-31       Impact factor: 4.132

Review 5.  Role of CHD5 in human cancers: 10 years later.

Authors:  Venkatadri Kolla; Tiangang Zhuang; Mayumi Higashi; Koumudi Naraparaju; Garrett M Brodeur
Journal:  Cancer Res       Date:  2014-01-13       Impact factor: 12.701

6.  A Chromodomain-Helicase-DNA-Binding Factor Functions in Chromatin Modification and Gene Regulation.

Authors:  Yue Lu; Feng Tan; Yu Zhao; Shaoli Zhou; Xiangsong Chen; Yongfeng Hu; Dao-Xiu Zhou
Journal:  Plant Physiol       Date:  2020-05-21       Impact factor: 8.340

7.  Nucleosome-specific, time-dependent changes in histone modifications during activation of the early growth response 1 (Egr1) gene.

Authors:  Ángela L Riffo-Campos; Josefa Castillo; Gema Tur; Paula González-Figueroa; Elena I Georgieva; José L Rodríguez; Gerardo López-Rodas; M Isabel Rodrigo; Luis Franco
Journal:  J Biol Chem       Date:  2014-11-06       Impact factor: 5.157

Review 8.  Mechanisms of action and regulation of ATP-dependent chromatin-remodelling complexes.

Authors:  Cedric R Clapier; Janet Iwasa; Bradley R Cairns; Craig L Peterson
Journal:  Nat Rev Mol Cell Biol       Date:  2017-05-17       Impact factor: 94.444

9.  Chd5 requires PHD-mediated histone 3 binding for tumor suppression.

Authors:  Shilpi Paul; Alex Kuo; Thomas Schalch; Hannes Vogel; Leemor Joshua-Tor; W Richard McCombie; Or Gozani; Molly Hammell; Alea A Mills
Journal:  Cell Rep       Date:  2013-01-10       Impact factor: 9.423

10.  TDP-43 Promotes Neurodegeneration by Impairing Chromatin Remodeling.

Authors:  Amit Berson; Ashley Sartoris; Raffaella Nativio; Vivianna Van Deerlin; Jon B Toledo; Sílvia Porta; Shichong Liu; Chia-Yu Chung; Benjamin A Garcia; Virginia M-Y Lee; John Q Trojanowski; F Brad Johnson; Shelley L Berger; Nancy M Bonini
Journal:  Curr Biol       Date:  2017-11-16       Impact factor: 10.834

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