Literature DB >> 22707715

Large multimeric assemblies of nucleosome assembly protein and histones revealed by small-angle X-ray scattering and electron microscopy.

Emily R Newman1, G Geoff Kneale, Raimond B G Ravelli, Manikandan Karuppasamy, Fatemeh Karimi Nejadasl, Ian A Taylor, John E McGeehan.   

Abstract

The nucleosome assembly protein (NAP) family represents a key group of histone chaperones that are essential for cell viability. Several x-ray structures of NAP1 dimers are available; however, there are currently no structures of this ubiquitous chaperone in complex with histones. We have characterized NAP1 from Xenopus laevis and reveal that it forms discrete multimers with histones H2A/H2B and H3/H4 at a stoichiometry of one NAP dimer to one histone fold dimer. These complexes have been characterized by size exclusion chromatography, analytical ultracentrifugation, multiangle laser light scattering, and small-angle x-ray scattering to reveal their oligomeric assembly states in solution. By employing single-particle cryo-electron microscopy, we visualized these complexes for the first time and show that they form heterogeneous ring-like structures, potentially acting as large scaffolds for histone assembly and exchange.

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Year:  2012        PMID: 22707715      PMCID: PMC3411005          DOI: 10.1074/jbc.M112.340422

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  44 in total

Review 1.  Chromatin assembly. Cooperation between histone chaperones and ATP-dependent nucleosome remodeling machines.

Authors:  Jessica K Tyler
Journal:  Eur J Biochem       Date:  2002-05

Review 2.  Histone chaperones and nucleosome assembly.

Authors:  Christopher W Akey; Karolin Luger
Journal:  Curr Opin Struct Biol       Date:  2003-02       Impact factor: 6.809

3.  Chromatin assembly in vitro with purified recombinant ACF and NAP-1.

Authors:  Dmitry V Fyodorov; James T Kadonaga
Journal:  Methods Enzymol       Date:  2003       Impact factor: 1.600

4.  Association states of nucleosome assembly protein 1 and its complexes with histones.

Authors:  Katalin Fejes Tóth; Jacek Mazurkiewicz; Karsten Rippe
Journal:  J Biol Chem       Date:  2005-01-31       Impact factor: 5.157

5.  A systematic study of bovine serum albumin (BSA) and sodium dodecyl sulfate (SDS) interactions by surface tension and small angle X-ray scattering.

Authors:  Sonia F Santos; Dino Zanette; Hannes Fischer; Rosangela Itri
Journal:  J Colloid Interface Sci       Date:  2003-06-15       Impact factor: 8.128

6.  Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and lamm equation modeling.

Authors:  P Schuck
Journal:  Biophys J       Date:  2000-03       Impact factor: 4.033

7.  Nucleosome assembly protein 1 exchanges histone H2A-H2B dimers and assists nucleosome sliding.

Authors:  Young-Jun Park; Jayanth V Chodaparambil; Yunhe Bao; Steven J McBryant; Karolin Luger
Journal:  J Biol Chem       Date:  2004-10-30       Impact factor: 5.157

8.  NAP1 modulates binding of linker histone H1 to chromatin and induces an extended chromatin fiber conformation.

Authors:  J Felix Kepert; Jacek Mazurkiewicz; Gerrit L Heuvelman; Katalin Fejes Tóth; Karsten Rippe
Journal:  J Biol Chem       Date:  2005-08-16       Impact factor: 5.157

9.  Preferential binding of the histone (H3-H4)2 tetramer by NAP1 is mediated by the amino-terminal histone tails.

Authors:  Steven J McBryant; Young-Jun Park; Stephanie M Abernathy; Paul J Laybourn; Jennifer K Nyborg; Karolin Luger
Journal:  J Biol Chem       Date:  2003-08-19       Impact factor: 5.157

10.  Self-association of the yeast nucleosome assembly protein 1.

Authors:  Steven J McBryant; Olve B Peersen
Journal:  Biochemistry       Date:  2004-08-17       Impact factor: 3.162

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  7 in total

1.  Chaperones: needed for both the good times and the bad times.

Authors:  Roy A Quinlan; R John Ellis
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-03-25       Impact factor: 6.237

2.  Coordinated Action of Nap1 and RSC in Disassembly of Tandem Nucleosomes.

Authors:  Rashmi Prasad; Sheena D'Arcy; Arjan Hada; Karolin Luger; Blaine Bartholomew
Journal:  Mol Cell Biol       Date:  2016-08-12       Impact factor: 4.272

Review 3.  Histone chaperone networks shaping chromatin function.

Authors:  Colin M Hammond; Caroline B Strømme; Hongda Huang; Dinshaw J Patel; Anja Groth
Journal:  Nat Rev Mol Cell Biol       Date:  2017-01-05       Impact factor: 94.444

4.  The histone chaperones Vps75 and Nap1 form ring-like, tetrameric structures in solution.

Authors:  Andrew Bowman; Colin M Hammond; Andrew Stirling; Richard Ward; Weifeng Shang; Hassane El-Mkami; David A Robinson; Dmitri I Svergun; David G Norman; Tom Owen-Hughes
Journal:  Nucleic Acids Res       Date:  2014-03-31       Impact factor: 16.971

5.  Non-rigid image registration to reduce beam-induced blurring of cryo-electron microscopy images.

Authors:  Fatemeh Karimi Nejadasl; Manikandan Karuppasamy; Emily R Newman; John E McGeehan; Raimond B G Ravelli
Journal:  J Synchrotron Radiat       Date:  2012-11-29       Impact factor: 2.616

6.  Structural evidence for Nap1-dependent H2A-H2B deposition and nucleosome assembly.

Authors:  Carmen Aguilar-Gurrieri; Amédé Larabi; Vinesh Vinayachandran; Nisha A Patel; Kuangyu Yen; Rohit Reja; Ima-O Ebong; Guy Schoehn; Carol V Robinson; B Franklin Pugh; Daniel Panne
Journal:  EMBO J       Date:  2016-05-25       Impact factor: 11.598

7.  The histone chaperone Vps75 forms multiple oligomeric assemblies capable of mediating exchange between histone H3-H4 tetramers and Asf1-H3-H4 complexes.

Authors:  Colin M Hammond; Ramasubramanian Sundaramoorthy; Mark Larance; Angus Lamond; Michael A Stevens; Hassane El-Mkami; David G Norman; Tom Owen-Hughes
Journal:  Nucleic Acids Res       Date:  2016-04-01       Impact factor: 16.971

  7 in total

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