Literature DB >> 22308335

Histone density is maintained during transcription mediated by the chromatin remodeler RSC and histone chaperone NAP1 in vitro.

Benjamin G Kuryan1, Jessica Kim, Nancy Nga H Tran, Sarah R Lombardo, Swaminathan Venkatesh, Jerry L Workman, Michael Carey.   

Abstract

ATPases and histone chaperones facilitate RNA polymerase II (pol II) elongation on chromatin. In vivo, the coordinated action of these enzymes is necessary to permit pol II passage through a nucleosome while restoring histone density afterward. We have developed a biochemical system recapitulating this basic process. Transcription through a nucleosome in vitro requires the ATPase remodels structure of chromatin (RSC) and the histone chaperone nucleosome assembly protein 1 (NAP1). In the presence of NAP1, RSC generates a hexasome. Despite the propensity of RSC to evict histones, NAP1 reprograms the reaction such that the hexasome is retained on the template during multiple rounds of transcription. This work has implications toward understanding the mechanism of pol II elongation on chromatin.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22308335      PMCID: PMC3277555          DOI: 10.1073/pnas.1109994109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  43 in total

1.  Genome-wide location and regulated recruitment of the RSC nucleosome-remodeling complex.

Authors:  Huck Hui Ng; François Robert; Richard A Young; Kevin Struhl
Journal:  Genes Dev       Date:  2002-04-01       Impact factor: 11.361

2.  Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution.

Authors:  A L Gnatt; P Cramer; J Fu; D A Bushnell; R D Kornberg
Journal:  Science       Date:  2001-04-19       Impact factor: 47.728

3.  FACT facilitates transcription-dependent nucleosome alteration.

Authors:  Rimma Belotserkovskaya; Sangtaek Oh; Vladimir A Bondarenko; George Orphanides; Vasily M Studitsky; Danny Reinberg
Journal:  Science       Date:  2003-08-22       Impact factor: 47.728

Review 4.  Chromatin remodeling by RNA polymerases.

Authors:  Vasily M Studitsky; Wendy Walter; Maria Kireeva; Mikhail Kashlev; Gary Felsenfeld
Journal:  Trends Biochem Sci       Date:  2004-03       Impact factor: 13.807

5.  Histone release during transcription: NAP1 forms a complex with H2A and H2B and facilitates a topologically dependent release of H3 and H4 from the nucleosome.

Authors:  Vladislav Levchenko; Vaughn Jackson
Journal:  Biochemistry       Date:  2004-03-09       Impact factor: 3.162

6.  Spt16-Pob3 and the HMG protein Nhp6 combine to form the nucleosome-binding factor SPN.

Authors:  T Formosa; P Eriksson; J Wittmeyer; J Ginn; Y Yu; D J Stillman
Journal:  EMBO J       Date:  2001-07-02       Impact factor: 11.598

7.  Transcription elongation factors repress transcription initiation from cryptic sites.

Authors:  Craig D Kaplan; Lisa Laprade; Fred Winston
Journal:  Science       Date:  2003-08-22       Impact factor: 47.728

8.  Genome-wide expression analysis of NAP1 in Saccharomyces cerevisiae.

Authors:  Kentaro Ohkuni; Katsuhiko Shirahige; Akihiko Kikuchi
Journal:  Biochem Biophys Res Commun       Date:  2003-06-20       Impact factor: 3.575

9.  Preferential binding of the histone (H3-H4)2 tetramer by NAP1 is mediated by the amino-terminal histone tails.

Authors:  Steven J McBryant; Young-Jun Park; Stephanie M Abernathy; Paul J Laybourn; Jennifer K Nyborg; Karolin Luger
Journal:  J Biol Chem       Date:  2003-08-19       Impact factor: 5.157

10.  The FACT complex travels with elongating RNA polymerase II and is important for the fidelity of transcriptional initiation in vivo.

Authors:  Paul B Mason; Kevin Struhl
Journal:  Mol Cell Biol       Date:  2003-11       Impact factor: 4.272

View more
  40 in total

1.  Nucleosome Dynamics during Transcription Elongation.

Authors:  Mai T Huynh; Satya P Yadav; Joseph C Reese; Tae-Hee Lee
Journal:  ACS Chem Biol       Date:  2020-12-02       Impact factor: 5.100

2.  Acetylated histone H3K56 interacts with Oct4 to promote mouse embryonic stem cell pluripotency.

Authors:  Yuliang Tan; Yong Xue; Chunying Song; Michael Grunstein
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-24       Impact factor: 11.205

Review 3.  Histone exchange, chromatin structure and the regulation of transcription.

Authors:  Swaminathan Venkatesh; Jerry L Workman
Journal:  Nat Rev Mol Cell Biol       Date:  2015-02-04       Impact factor: 94.444

4.  Chromatin potentiates transcription.

Authors:  Shigeki Nagai; Ralph E Davis; Pierre Jean Mattei; Kyle Patrick Eagen; Roger D Kornberg
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-30       Impact factor: 11.205

5.  Establishment and Maintenance of Chromatin Architecture Are Promoted Independently of Transcription by the Histone Chaperone FACT and H3-K56 Acetylation in Saccharomyces cerevisiae.

Authors:  Laura L McCullough; Trang H Pham; Timothy J Parnell; Zaily Connell; Mahesh B Chandrasekharan; David J Stillman; Tim Formosa
Journal:  Genetics       Date:  2019-01-24       Impact factor: 4.562

6.  The Mi-2 homolog Mit1 actively positions nucleosomes within heterochromatin to suppress transcription.

Authors:  Kevin M Creamer; Godwin Job; Sreenath Shanker; Geoffrey A Neale; Yuan-chi Lin; Blaine Bartholomew; Janet F Partridge
Journal:  Mol Cell Biol       Date:  2014-03-24       Impact factor: 4.272

7.  RNA polymerase III accurately initiates transcription from RNA polymerase II promoters in vitro.

Authors:  Sascha H C Duttke
Journal:  J Biol Chem       Date:  2014-06-10       Impact factor: 5.157

8.  Coordinated Action of Nap1 and RSC in Disassembly of Tandem Nucleosomes.

Authors:  Rashmi Prasad; Sheena D'Arcy; Arjan Hada; Karolin Luger; Blaine Bartholomew
Journal:  Mol Cell Biol       Date:  2016-08-12       Impact factor: 4.272

9.  The RSC complex localizes to coding sequences to regulate Pol II and histone occupancy.

Authors:  Marla M Spain; Suraiya A Ansari; Rakesh Pathak; Michael J Palumbo; Randall H Morse; Chhabi K Govind
Journal:  Mol Cell       Date:  2014-11-06       Impact factor: 17.970

10.  Cockayne syndrome B protein acts as an ATP-dependent processivity factor that helps RNA polymerase II overcome nucleosome barriers.

Authors:  Jun Xu; Wei Wang; Liang Xu; Jia-Yu Chen; Jenny Chong; Juntaek Oh; Andres E Leschziner; Xiang-Dong Fu; Dong Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-28       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.