Literature DB >> 32758421

Conformational Stability and Dynamics in Crystals Recapitulate Protein Behavior in Solution.

Benedetta Maria Sala1, Tanguy Le Marchand2, Guido Pintacuda2, Carlo Camilloni3, Antonino Natalello4, Stefano Ricagno5.   

Abstract

A growing body of evidences has established that in many cases proteins may preserve most of their function and flexibility in a crystalline environment, and several techniques are today capable to characterize molecular properties of proteins in tightly packed lattices. Intriguingly, in the case of amyloidogenic precursors, the presence of transiently populated states (hidden to conventional crystallographic studies) can be correlated to the pathological fate of the native fold; the low fold stability of the native state is a hallmark of aggregation propensity. It remains unclear, however, to which extent biophysical properties of proteins such as the presence of transient conformations or protein stability characterized in crystallo reflect the protein behavior that is more commonly studied in solution. Here, we address this question by investigating some biophysical properties of a prototypical amyloidogenic system, β2-microglobulin in solution and in microcrystalline state. By combining NMR chemical shifts with molecular dynamics simulations, we confirmed that conformational dynamics of β2-microglobulin native state in the crystal lattice is in keeping with what observed in solution. A comparative study of protein stability in solution and in crystallo is then carried out, monitoring the change in protein secondary structure at increasing temperature by Fourier transform infrared spectroscopy. The increased structural order of the crystalline state contributes to provide better resolved spectral components compared to those collected in solution and crucially, the crystalline samples display thermal stabilities in good agreement with the trend observed in solution. Overall, this work shows that protein stability and occurrence of pathological hidden states in crystals parallel their solution counterpart, confirming the interest of crystals as a platform for the biophysical characterization of processes such as unfolding and aggregation.
Copyright © 2020 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2020        PMID: 32758421      PMCID: PMC7474178          DOI: 10.1016/j.bpj.2020.07.015

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  52 in total

Review 1.  Analyzing protein functions in four dimensions.

Authors:  J Hajdu; R Neutze; T Sjögren; K Edman; A Szöke; R C Wilmouth; C M Wilmot
Journal:  Nat Struct Biol       Date:  2000-11

2.  Quantitative analysis of protein backbone dynamics in microcrystalline ubiquitin by solid-state NMR spectroscopy.

Authors:  Paul Schanda; Beat H Meier; Matthias Ernst
Journal:  J Am Chem Soc       Date:  2010-10-26       Impact factor: 15.419

3.  Quantitative analysis of backbone dynamics in a crystalline protein from nitrogen-15 spin-lattice relaxation.

Authors:  Nicolas Giraud; Martin Blackledge; Maurice Goldman; Anja Böckmann; Anne Lesage; François Penin; Lyndon Emsley
Journal:  J Am Chem Soc       Date:  2005-12-28       Impact factor: 15.419

Review 4.  Infrared protein crystallography.

Authors:  J Timothy Sage; Yunbin Zhang; John McGeehan; Raimond B G Ravelli; Martin Weik; Jasper J van Thor
Journal:  Biochim Biophys Acta       Date:  2011-03-02

5.  Site-specific measurement of slow motions in proteins.

Authors:  Józef R Lewandowski; Hans Jürgen Sass; Stephan Grzesiek; Martin Blackledge; Lyndon Emsley
Journal:  J Am Chem Soc       Date:  2011-10-03       Impact factor: 15.419

6.  Pushing the detection limit of infrared spectroscopy for structural analysis of dilute protein samples.

Authors:  Maurizio Baldassarre; Andreas Barth
Journal:  Analyst       Date:  2014-11-07       Impact factor: 4.616

7.  A comparison of infrared spectra of proteins in solution and crystalline forms.

Authors:  J M Hadden; D Chapman; D C Lee
Journal:  Biochim Biophys Acta       Date:  1995-04-27

8.  Snapshot of a key intermediate in enzymatic thiamin catalysis: crystal structure of the alpha-carbanion of (alpha,beta-dihydroxyethyl)-thiamin diphosphate in the active site of transketolase from Saccharomyces cerevisiae.

Authors:  Erik Fiedler; Stina Thorell; Tatyana Sandalova; Ralph Golbik; Stephan König; Gunter Schneider
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-02       Impact factor: 11.205

9.  Protein side-chain dynamics as observed by solution- and solid-state NMR spectroscopy: a similarity revealed.

Authors:  Vipin Agarwal; Yi Xue; Bernd Reif; Nikolai R Skrynnikov
Journal:  J Am Chem Soc       Date:  2008-12-10       Impact factor: 15.419

10.  Amyloid formation under physiological conditions proceeds via a native-like folding intermediate.

Authors:  Thomas R Jahn; Martin J Parker; Steve W Homans; Sheena E Radford
Journal:  Nat Struct Mol Biol       Date:  2006-02-19       Impact factor: 15.369

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  1 in total

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Authors:  Tanguy Le Marchand; Tobias Schubeis; Marta Bonaccorsi; Piotr Paluch; Daniela Lalli; Andrew J Pell; Loren B Andreas; Kristaps Jaudzems; Jan Stanek; Guido Pintacuda
Journal:  Chem Rev       Date:  2022-05-10       Impact factor: 72.087

  1 in total

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