Literature DB >> 20625480

Structural dynamics of bio-macromolecules by NMR: the slowly relaxing local structure approach.

Eva Meirovitch1, Yury E Shapiro, Antonino Polimeno, Jack H Freed.   

Abstract

Keywords:  NMR spin relaxation; SRLS; protein dynamics; stochastic motional models

Mesh：

Substances：

Year:  2010        PMID： 20625480      PMCID： PMC2899824          DOI： 10.1016/j.pnmrs.2010.03.002

Source DB:  PubMed          Journal:  Prog Nucl Magn Reson Spectrosc        ISSN： 0079-6565            Impact factor:   9.795


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  185 in total

1.  Temperature dependence of the internal dynamics of a calmodulin-peptide complex.

Authors:  Andrew L Lee; Kim A Sharp; James K Kranz; Xiang-Jin Song; A Joshua Wand
Journal:  Biochemistry       Date:  2002-11-19       Impact factor: 3.162

2.  Temperature dependence of anisotropic protein backbone dynamics.

Authors:  Tianzhi Wang; Sheng Cai; Erik R P Zuiderweg
Journal:  J Am Chem Soc       Date:  2003-07-16       Impact factor: 15.419

3.  Reorientational contact-weighted elastic network model for the prediction of protein dynamics: comparison with NMR relaxation.

Authors:  Dengming Ming; Rafael Brüschweiler
Journal:  Biophys J       Date:  2006-02-24       Impact factor: 4.033

4.  Study of global motions in proteins by weighted masses molecular dynamics: adenylate kinase as a test case.

Authors:  S Elamrani; M B Berry; G N Phillips; J A McCammon
Journal:  Proteins       Date:  1996-05

5.  Evaluation of energetic and dynamic coupling networks in a PDZ domain protein.

Authors:  Ernesto J Fuentes; Steven A Gilmore; Randall V Mauldin; Andrew L Lee
Journal:  J Mol Biol       Date:  2006-09-01       Impact factor: 5.469

6.  Structure of calmodulin refined at 2.2 A resolution.

Authors:  Y S Babu; C E Bugg; W J Cook
Journal:  J Mol Biol       Date:  1988-11-05       Impact factor: 5.469

7.  Deuterium spin probes of side-chain dynamics in proteins. 2. Spectral density mapping and identification of nanosecond time-scale side-chain motions.

Authors:  Nikolai R Skrynnikov; Oscar Millet; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2002-06-05       Impact factor: 15.419

8.  Limited variations in 15N CSA magnitudes and orientations in ubiquitin are revealed by joint analysis of longitudinal and transverse NMR relaxation.

Authors:  Peter Damberg; Jüri Jarvet; Astrid Gräslund
Journal:  J Am Chem Soc       Date:  2005-02-16       Impact factor: 15.419

9.  Large-scale allosteric conformational transitions of adenylate kinase appear to involve a population-shift mechanism.

Authors:  Karunesh Arora; Charles L Brooks
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-13       Impact factor: 11.205

10.  Dynamics of reassembled thioredoxin studied by magic angle spinning NMR: snapshots from different time scales.

Authors:  Jun Yang; Maria Luisa Tasayco; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2009-09-30       Impact factor: 15.419
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  25 in total

1.  Comment on "The physical basis of model-free analysis of NMR relaxation data from proteins and complex fluids" [J. Chem. Phys. 131, 224507 (2009)].

Authors:  Eva Meirovitch; Antonino Polimeno; Jack H Freed
Journal:  J Chem Phys       Date:  2010-05-28       Impact factor: 3.488

Review 2.  NMR studies of dynamic biomolecular conformational ensembles.

Authors:  Dennis A Torchia
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2014-11-28       Impact factor: 9.795

3.  Temperature dependence of fast carbonyl backbone dynamics in chicken villin headpiece subdomain.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky
Journal:  J Biomol NMR       Date:  2011-03-17       Impact factor: 2.835

4.  Protein dynamics in the solid state from 2H NMR line shape analysis: a consistent perspective.

Authors:  Eva Meirovitch; Zhichun Liang; Jack H Freed
Journal:  J Phys Chem B       Date:  2015-02-03       Impact factor: 2.991

Review 5.  An introduction to NMR-based approaches for measuring protein dynamics.

Authors:  Ian R Kleckner; Mark P Foster
Journal:  Biochim Biophys Acta       Date:  2010-11-06

6.  Protein dynamics in the solid-state from 2H NMR lineshape analysis. III. MOMD in the presence of Magic Angle Spinning.

Authors:  Eva Meirovitch; Zhichun Liang; Jack H Freed
Journal:  Solid State Nucl Magn Reson       Date:  2017-11-21       Impact factor: 2.293

7.  Characterizing highly dynamic conformational states: The transcription bubble in RNAP-promoter open complex as an example.

Authors:  Eitan Lerner; Antonino Ingargiola; Shimon Weiss
Journal:  J Chem Phys       Date:  2018-03-28       Impact factor: 3.488

8.  Characterization of Internal Protein Dynamics and Conformational Entropy by NMR Relaxation.

Authors:  Matthew A Stetz; José A Caro; Sravya Kotaru; Xuejun Yao; Bryan S Marques; Kathleen G Valentine; A Joshua Wand
Journal:  Methods Enzymol       Date:  2018-12-08       Impact factor: 1.600

9.  Backbone dynamics of deoxy and carbonmonoxy hemoglobin by NMR/SRLS.

Authors:  Eva Meirovitch; Mirco Zerbetto; Antonino Polimeno; Jack H Freed
Journal:  J Phys Chem B       Date:  2010-12-16       Impact factor: 2.991

10.  Analysis of 15N-1H NMR relaxation in proteins by a combined experimental and molecular dynamics simulation approach: picosecond-nanosecond dynamics of the Rho GTPase binding domain of plexin-B1 in the dimeric state indicates allosteric pathways.

Authors:  Mirco Zerbetto; Ross Anderson; Sabine Bouguet-Bonnet; Mariano Rech; Liqun Zhang; Eva Meirovitch; Antonino Polimeno; Matthias Buck
Journal:  J Phys Chem B       Date:  2012-12-28       Impact factor: 2.991
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