Literature DB >> 15461445

Kinetics and thermodynamics of RRF, EF-G, and thiostrepton interaction on the Escherichia coli ribosome.

Hyuk-Soo Seo1, Michael Kiel, Dongli Pan, V Samuel Raj, Akira Kaji, Barry S Cooperman.   

Abstract

Ribosome recycling factor (RRF) and elongation factor-G (EF-G) are jointly essential for recycling bacterial ribosomes following termination of protein synthesis. Here we present equilibrium and rapid kinetic measurements permitting formulation of a minimal kinetic scheme that accounts quantitatively for RRF and EF-G interaction on the Escherichia coli ribosome. RRF and EF-G (a) each form a binary complex on binding to a bare ribosome which undergoes isomerization to a more stable complex, (b) form mixed ternary complexes on the ribosome in which the affinity for each factor is considerably lower than its affinity for binding to a bare ribosome, and (c) each bind to two sites per ribosome, with EF-G having considerably higher second-site affinity than RRF. Addition of EF-G to the ribosome-RRF complex induces rapid RRF dissociation, at a rate compatible with the rate of ribosome recycling in vivo, but added RRF does not increase the lability of ribosome-bound EF-G. Added thiostrepton slows the initial binding of EF-G, and prevents both formation of the more stable EF-G complex and EF-G-induced RRF dissociation. These findings are relevant for the mechanism of post-termination complex disassembly.

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Year:  2004        PMID: 15461445     DOI: 10.1021/bi048927p

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  19 in total

1.  Role and timing of GTP binding and hydrolysis during EF-G-dependent tRNA translocation on the ribosome.

Authors:  Berthold Wilden; Andreas Savelsbergh; Marina V Rodnina; Wolfgang Wintermeyer
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-29       Impact factor: 11.205

Review 2.  Mechanism of recycling of post-termination ribosomal complexes in eubacteria: a new role of initiation factor 3.

Authors:  Anuradha Seshadri; Umesh Varshney
Journal:  J Biosci       Date:  2006-06       Impact factor: 1.826

3.  The sarcin-ricin loop of 23S rRNA is essential for assembly of the functional core of the 50S ribosomal subunit.

Authors:  Laura Lancaster; Nicole J Lambert; Eric J Maklan; Lucas H Horan; Harry F Noller
Journal:  RNA       Date:  2008-08-28       Impact factor: 4.942

4.  Control of phosphate release from elongation factor G by ribosomal protein L7/12.

Authors:  Andreas Savelsbergh; Dagmar Mohr; Ute Kothe; Wolfgang Wintermeyer; Marina V Rodnina
Journal:  EMBO J       Date:  2005-11-17       Impact factor: 11.598

5.  Reaction dynamics analysis of a reconstituted Escherichia coli protein translation system by computational modeling.

Authors:  Tomoaki Matsuura; Naoki Tanimura; Kazufumi Hosoda; Tetsuya Yomo; Yoshihiro Shimizu
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-06       Impact factor: 11.205

6.  Ribosomal protein L7/L12 is required for GTPase translation factors EF-G, RF3, and IF2 to bind in their GTP state to 70S ribosomes.

Authors:  Markus A Carlson; Bassam G Haddad; Amanda J Weis; Colby S Blackwood; Catherine D Shelton; Michelle E Wuerth; Justin D Walter; Paul Clint Spiegel
Journal:  FEBS J       Date:  2017-04-10       Impact factor: 5.542

7.  Interaction of RRF and EF-G from E. coli and T. thermophilus with ribosomes from both origins--insight into the mechanism of the ribosome recycling step.

Authors:  V Samuel Raj; Hideko Kaji; Akira Kaji
Journal:  RNA       Date:  2005-01-20       Impact factor: 4.942

Review 8.  Mechanistic insights into antibiotic action on the ribosome through single-molecule fluorescence imaging.

Authors:  Leyi Wang; Michael R Wasserman; Michael B Feldman; Roger B Altman; Scott C Blanchard
Journal:  Ann N Y Acad Sci       Date:  2011-12       Impact factor: 5.691

9.  tRNA Fluctuations Observed on Stalled Ribosomes Are Suppressed during Ongoing Protein Synthesis.

Authors:  Ryan M Jamiolkowski; Chunlai Chen; Barry S Cooperman; Yale E Goldman
Journal:  Biophys J       Date:  2017-12-05       Impact factor: 4.033

10.  Specific interaction between EF-G and RRF and its implication for GTP-dependent ribosome splitting into subunits.

Authors:  Ning Gao; Andrey V Zavialov; Måns Ehrenberg; Joachim Frank
Journal:  J Mol Biol       Date:  2007-10-16       Impact factor: 5.469

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