Literature DB >> 22407015

A conserved proline switch on the ribosome facilitates the recruitment and binding of trGTPases.

Li Wang1, Fang Yang, Dejiu Zhang, Zhi Chen, Rui-Ming Xu, Knud H Nierhaus, Weimin Gong, Yan Qin.   

Abstract

When elongation factor G (EF-G) binds to the ribosome, it first makes contact with the C-terminal domain (CTD) of L12 before interacting with the N-terminal domain (NTD) of L11. Here we have identified a universally conserved residue, Pro22 of L11, that functions as a proline switch (PS22), as well as the corresponding center of peptidyl-prolyl cis-trans isomerase (PPIase) activity on EF-G that drives the cis-trans isomerization of PS22. Only the cis configuration of PS22 allows direct contact between the L11 NTD and the L12 CTD. Mutational analyses of both PS22 and the residues of the EF-G PPIase center reveal their function in translational GTPase (trGTPase) activity, protein synthesis and cell survival in Escherichia coli. Finally, we demonstrate that all known universal trGTPases contain an active PPIase center. Our observations suggest that the cis-trans isomerization of the L11 PS22 is a universal event required for an efficient turnover of trGTPases throughout the translation process.

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Year:  2012        PMID: 22407015     DOI: 10.1038/nsmb.2254

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  49 in total

1.  The ribosomal binding and peptidyl-tRNA hydrolysis functions of Escherichia coli release factor 2 are linked through residue 246.

Authors:  D N Wilson; D Guévremont; W P Tate
Journal:  RNA       Date:  2000-12       Impact factor: 4.942

2.  Trigger factor-assisted folding of bovine carbonic anhydrase II.

Authors:  Chuan-Peng Liu; Jun-Mei Zhou
Journal:  Biochem Biophys Res Commun       Date:  2004-01-16       Impact factor: 3.575

3.  Conformation and dynamics of ribosomal stalk protein L12 in solution and on the ribosome.

Authors:  Frans A A Mulder; Lamine Bouakaz; Anna Lundell; Musturi Venkataramana; Anders Liljas; Mikael Akke; Suparna Sanyal
Journal:  Biochemistry       Date:  2004-05-25       Impact factor: 3.162

4.  Guanosinetriphosphatase activity dependent on elongation factor Tu and ribosomal protein L7/L12.

Authors:  D Donner; R Villems; A Liljas; C G Kurland
Journal:  Proc Natl Acad Sci U S A       Date:  1978-07       Impact factor: 11.205

5.  The X-Pro peptide bond as an nmr probe for conformational studies of flexible linear peptides.

Authors:  C Grathwohl; K Wüthrich
Journal:  Biopolymers       Date:  1976-10       Impact factor: 2.505

6.  Visualization of elongation factor G on the Escherichia coli 70S ribosome: the mechanism of translocation.

Authors:  R K Agrawal; P Penczek; R A Grassucci; J Frank
Journal:  Proc Natl Acad Sci U S A       Date:  1998-05-26       Impact factor: 11.205

7.  Structure of the base of the L7/L12 stalk of the Haloarcula marismortui large ribosomal subunit: analysis of L11 movements.

Authors:  Jennifer M Kavran; Thomas A Steitz
Journal:  J Mol Biol       Date:  2007-06-04       Impact factor: 5.469

8.  The mechanism for activation of GTP hydrolysis on the ribosome.

Authors:  Rebecca M Voorhees; T Martin Schmeing; Ann C Kelley; V Ramakrishnan
Journal:  Science       Date:  2010-11-05       Impact factor: 47.728

9.  The crystal structure of the ribosome bound to EF-Tu and aminoacyl-tRNA.

Authors:  T Martin Schmeing; Rebecca M Voorhees; Ann C Kelley; Yong-Gui Gao; Frank V Murphy; John R Weir; V Ramakrishnan
Journal:  Science       Date:  2009-10-15       Impact factor: 47.728

10.  A ribosome-associated peptidyl-prolyl cis/trans isomerase identified as the trigger factor.

Authors:  G Stoller; K P Rücknagel; K H Nierhaus; F X Schmid; G Fischer; J U Rahfeld
Journal:  EMBO J       Date:  1995-10-16       Impact factor: 11.598

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  11 in total

1.  EF4 disengages the peptidyl-tRNA CCA end and facilitates back-translocation on the 70S ribosome.

Authors:  Dejiu Zhang; Kaige Yan; Guangqiao Liu; Guangtao Song; Jiejian Luo; Yi Shi; Erchao Cheng; Shan Wu; Taijiao Jiang; Jizhong Lou; Ning Gao; Yan Qin
Journal:  Nat Struct Mol Biol       Date:  2016-01-25       Impact factor: 15.369

Review 2.  EF-G and EF4: translocation and back-translocation on the bacterial ribosome.

Authors:  Hiroshi Yamamoto; Yan Qin; John Achenbach; Chengmin Li; Jaroslaw Kijek; Christian M T Spahn; Knud H Nierhaus
Journal:  Nat Rev Microbiol       Date:  2013-12-23       Impact factor: 60.633

3.  EF-G catalyzes tRNA translocation by disrupting interactions between decoding center and codon-anticodon duplex.

Authors:  Guangqiao Liu; Guangtao Song; Danyang Zhang; Dejiu Zhang; Zhikai Li; Zhixin Lyu; Jianshu Dong; John Achenbach; Weimin Gong; Xin Sheng Zhao; Knud H Nierhaus; Yan Qin
Journal:  Nat Struct Mol Biol       Date:  2014-08-10       Impact factor: 15.369

4.  Ribosomal protein L7/L12 is required for GTPase translation factors EF-G, RF3, and IF2 to bind in their GTP state to 70S ribosomes.

Authors:  Markus A Carlson; Bassam G Haddad; Amanda J Weis; Colby S Blackwood; Catherine D Shelton; Michelle E Wuerth; Justin D Walter; Paul Clint Spiegel
Journal:  FEBS J       Date:  2017-04-10       Impact factor: 5.542

5.  Functional analysis of the uL11 protein impact on translational machinery.

Authors:  Leszek Wawiórka; Eliza Molestak; Monika Szajwaj; Barbara Michalec-Wawiórka; Aleksandra Boguszewska; Lidia Borkiewicz; Vladyslava Liudkovska; Joanna Kufel; Marek Tchórzewski
Journal:  Cell Cycle       Date:  2016       Impact factor: 4.534

6.  Cis phosphorylated tau as the earliest detectable pathogenic conformation in Alzheimer disease, offering novel diagnostic and therapeutic strategies.

Authors:  Kazuhiro Nakamura; Xiao Zhen Zhou; Kun Ping Lu
Journal:  Prion       Date:  2012-11-15       Impact factor: 3.931

7.  Initiation of prolyl cis-trans isomerisation in the CDR-H3 loop of an antibody in response to antigen binding.

Authors:  Keiko Shinoda; Hideaki Fujitani
Journal:  Sci Rep       Date:  2017-12-05       Impact factor: 4.379

8.  Subinhibitory Concentrations of Bacteriostatic Antibiotics Induce relA-Dependent and relA-Independent Tolerance to β-Lactams.

Authors:  Pavel Kudrin; Vallo Varik; Sofia Raquel Alves Oliveira; Jelena Beljantseva; Teresa Del Peso Santos; Ievgen Dzhygyr; Dominik Rejman; Felipe Cava; Tanel Tenson; Vasili Hauryliuk
Journal:  Antimicrob Agents Chemother       Date:  2017-03-24       Impact factor: 5.191

9.  Common chaperone activity in the G-domain of trGTPase protects L11-L12 interaction on the ribosome.

Authors:  Dandan Zhang; Guangqiao Liu; Jiaying Xue; Jizhong Lou; Knud H Nierhaus; Weimin Gong; Yan Qin
Journal:  Nucleic Acids Res       Date:  2012-09-10       Impact factor: 16.971

Review 10.  Functional Importance of Mobile Ribosomal Proteins.

Authors:  Kai-Chun Chang; Jin-Der Wen; Lee-Wei Yang
Journal:  Biomed Res Int       Date:  2015-09-20       Impact factor: 3.411

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