Literature DB >> 16208011

Evaluation of universal probes and primer sets for assessing total bacterial load in clinical samples: general implications and practical use in endodontic antimicrobial therapy.

H P Horz1, M E Vianna, B P F A Gomes, G Conrads.   

Abstract

By re-examining 10 previously published "universal" PCR assays using the ARB phylogenetic software package and database with 41,000 16S rRNA gene sequences, we found that they differed considerably in their coverage of the domain Bacteria. We evaluated the broadest-range real-time quantitative PCR protocol for its efficacy in measuring the antimicrobial effects of endodontic treatments.

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Year:  2005        PMID: 16208011      PMCID: PMC1248440          DOI: 10.1128/JCM.43.10.5332-5337.2005

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  33 in total

1.  Factors affecting the long-term results of endodontic treatment.

Authors:  U Sjogren; B Hagglund; G Sundqvist; K Wing
Journal:  J Endod       Date:  1990-10       Impact factor: 4.171

2.  Intraradicular bacteria and fungi in root-filled, asymptomatic human teeth with therapy-resistant periapical lesions: a long-term light and electron microscopic follow-up study.

Authors:  P N Nair; U Sjögren; G Krey; K E Kahnberg; G Sundqvist
Journal:  J Endod       Date:  1990-12       Impact factor: 4.171

3.  Investigation of bacterial communities associated with asymptomatic and symptomatic endodontic infections by denaturing gradient gel electrophoresis fingerprinting approach.

Authors:  J F Siqueira; I N Rôças; A S Rosado
Journal:  Oral Microbiol Immunol       Date:  2004-12

4.  Screening of a fosmid library of marine environmental genomic DNA fragments reveals four clones related to members of the order Planctomycetales.

Authors:  K L Vergin; E Urbach; J L Stein; E F DeLong; B D Lanoil; S J Giovannoni
Journal:  Appl Environ Microbiol       Date:  1998-08       Impact factor: 4.792

Review 5.  Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis.

Authors:  F von Wintzingerode; U B Göbel; E Stackebrandt
Journal:  FEMS Microbiol Rev       Date:  1997-11       Impact factor: 16.408

6.  Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR.

Authors:  M T Suzuki; S J Giovannoni
Journal:  Appl Environ Microbiol       Date:  1996-02       Impact factor: 4.792

7.  Bacteriologic evaluation of the efficacy of mechanical root canal instrumentation in endodontic therapy.

Authors:  A Byström; G Sundqvist
Journal:  Scand J Dent Res       Date:  1981-08

8.  Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species.

Authors:  V Farrelly; F A Rainey; E Stackebrandt
Journal:  Appl Environ Microbiol       Date:  1995-07       Impact factor: 4.792

Review 9.  Cleanliness, disinfection, and sterilization of the root canal.

Authors:  H Martin
Journal:  Curr Opin Dent       Date:  1991-12

10.  Phylogenetic analysis of the spirochetes.

Authors:  B J Paster; F E Dewhirst; W G Weisburg; L A Tordoff; G J Fraser; R B Hespell; T B Stanton; L Zablen; L Mandelco; C R Woese
Journal:  J Bacteriol       Date:  1991-10       Impact factor: 3.490

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  47 in total

1.  Non-invasive detection of pulmonary pathogens in ventilator-circuit filters by PCR.

Authors:  Richard J Isaacs; Ken Debelak; Patrick R Norris; Judith M Jenkins; Jeffrey C Rooks; Todd R Young; Addison K May; Erik M Boczko
Journal:  Am J Transl Res       Date:  2012-01-05       Impact factor: 4.060

2.  Development of the honey bee gut microbiome throughout the queen-rearing process.

Authors:  David R Tarpy; Heather R Mattila; Irene L G Newton
Journal:  Appl Environ Microbiol       Date:  2015-02-27       Impact factor: 4.792

3.  Use of quantitative PCR and culture methods to characterize ecological flux in bacterial biofilms.

Authors:  F Dalwai; D A Spratt; J Pratten
Journal:  J Clin Microbiol       Date:  2007-06-27       Impact factor: 5.948

4.  Seawater inundation from the 2011 Tohoku tsunami continues to strongly affect soil bacterial communities 1 year later.

Authors:  Ryoki Asano; Yutaka Nakai; Wataru Kawada; Yoichiro Shimura; Tamio Inamoto; Jun Fukushima
Journal:  Microb Ecol       Date:  2013-07-12       Impact factor: 4.552

5.  A pilot study of the noninvasive assessment of the lung microbiota as a potential tool for the early diagnosis of ventilator-associated pneumonia.

Authors:  Addison K May; Jacob S Brady; Joann Romano-Keeler; Wonder P Drake; Patrick R Norris; Judith M Jenkins; Richard J Isaacs; Erik M Boczko
Journal:  Chest       Date:  2015-06       Impact factor: 9.410

6.  Diazotrophic diversity in the rhizosphere of two exotic weed plants, Prosopis juliflora and Parthenium hysterophorus.

Authors:  B Cibichakravarthy; R Preetha; S P Sundaram; K Kumar; D Balachandar
Journal:  World J Microbiol Biotechnol       Date:  2011-07-30       Impact factor: 3.312

Review 7.  Anaerobic infections: update on treatment considerations.

Authors:  Elisabeth Nagy
Journal:  Drugs       Date:  2010-05-07       Impact factor: 9.546

8.  Enteric dysbiosis associated with a mouse model of alcoholic liver disease.

Authors:  Arthur W Yan; Derrick E Fouts; Johannes Brandl; Peter Stärkel; Manolito Torralba; Eckart Schott; Hide Tsukamoto; Karen E Nelson; David A Brenner; Bernd Schnabl
Journal:  Hepatology       Date:  2010-12-10       Impact factor: 17.425

9.  Antimicrobial susceptibility of Lactobacillus species isolated from commercial ethanol plants.

Authors:  Kenneth M Bischoff; Kelly A Skinner-Nemec; Timothy D Leathers
Journal:  J Ind Microbiol Biotechnol       Date:  2007-08-28       Impact factor: 3.346

10.  Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults.

Authors:  Mirjana Rajilić-Stojanović; Hans G H J Heilig; Douwe Molenaar; Kajsa Kajander; Anu Surakka; Hauke Smidt; Willem M de Vos
Journal:  Environ Microbiol       Date:  2009-03-11       Impact factor: 5.491

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