Literature DB >> 9687477

Screening of a fosmid library of marine environmental genomic DNA fragments reveals four clones related to members of the order Planctomycetales.

K L Vergin1, E Urbach, J L Stein, E F DeLong, B D Lanoil, S J Giovannoni.   

Abstract

A fosmid library with inserts containing approximately 40 kb of marine bacterial DNA (J. L. Stein, T. L. Marsh, K. Y. Wu, H. Shizuya, and E. F. DeLong, J. Bacteriol. 178:591-599, 1996) yielded four clones with 16S rRNA genes from the order Planctomycetales. Three of the clones belong to the Pirellula group and one clone belongs to the Planctomyces group, based on phylogenetic and signature nucleotide analyses of full-length 16S rRNA genes. Sequence analysis of the ends of the genes revealed a consistent mismatch in a widely used bacterium-specific 16S rRNA PCR amplification priming site (27F), which has also been reported in some thermophiles and spirochetes.

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Substances：

Year:  1998        PMID： 9687477      PMCID： PMC106819     

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  13 in total

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Journal:  Nucleic Acids Res       Date:  1991-07-25       Impact factor: 16.971

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Review 5.  The planctomycetes: emerging models for microbial ecology, evolution and cell biology.

Authors:  J A Fuerst
Journal:  Microbiology       Date:  1995-07       Impact factor: 2.777

6.  Unraveling the extent of diversity within the order Planctomycetales.

Authors:  N Ward; F A Rainey; E Stackebrandt; H Schlesner
Journal:  Appl Environ Microbiol       Date:  1995-06       Impact factor: 4.792

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Journal:  Microbiol Rev       Date:  1983-12

8.  Were the original eubacteria thermophiles?

Authors:  L Achenbach-Richter; R Gupta; K O Stetter; C R Woese
Journal:  Syst Appl Microbiol       Date:  1987       Impact factor: 4.022

9.  Brevinema andersonii gen. nov., sp. nov., an infectious spirochete isolated from the short-tailed shrew (Blarina brevicauda) and the white-footed mouse (Peromyscus leucopus).

Authors:  D L Defosse; R C Johnson; B J Paster; F E Dewhirst; G J Fraser
Journal:  Int J Syst Bacteriol       Date:  1995-01

10.  Phylogenetic analysis of the spirochetes.

Authors:  B J Paster; F E Dewhirst; W G Weisburg; L A Tordoff; G J Fraser; R B Hespell; T B Stanton; L Zablen; L Mandelco; C R Woese
Journal:  J Bacteriol       Date:  1991-10       Impact factor: 3.490
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  46 in total

1.  Novel bacterial lineages at the (sub)division level as detected by signature nucleotide-targeted recovery of 16S rRNA genes from bulk soil and rice roots of flooded rice microcosms.

Authors:  M Derakshani; T Lukow; W Liesack
Journal:  Appl Environ Microbiol       Date:  2001-02       Impact factor: 4.792

2.  Comparative genomic analysis of archaeal genotypic variants in a single population and in two different oceanic provinces.

Authors:  Oded Béjà; Eugene V Koonin; L Aravind; Lance T Taylor; Heidi Seitz; Jefferey L Stein; Daniel C Bensen; Robert A Feldman; Ronald V Swanson; Edward F DeLong
Journal:  Appl Environ Microbiol       Date:  2002-01       Impact factor: 4.792

3.  Molecular evidence for novel planctomycete diversity in a municipal wastewater treatment plant.

Authors:  Rakia Chouari; Denis Le Paslier; Patrick Daegelen; Philippe Ginestet; Jean Weissenbach; Abdelghani Sghir
Journal:  Appl Environ Microbiol       Date:  2003-12       Impact factor: 4.792

4.  A census of rRNA genes and linked genomic sequences within a soil metagenomic library.

Authors:  Mark R Liles; Brian F Manske; Scott B Bintrim; Jo Handelsman; Robert M Goodman
Journal:  Appl Environ Microbiol       Date:  2003-05       Impact factor: 4.792

5.  Discovery of the novel candidate phylum "Poribacteria" in marine sponges.

Authors:  Lars Fieseler; Matthias Horn; Michael Wagner; Ute Hentschel
Journal:  Appl Environ Microbiol       Date:  2004-06       Impact factor: 4.792

6.  Diversity and seasonal changes of uncultured Planctomycetales in river biofilms.

Authors:  I H M Brümmer; A D M Felske; I Wagner-Döbler
Journal:  Appl Environ Microbiol       Date:  2004-09       Impact factor: 4.792

7.  Influence of an oyster reef on development of the microbial heterotrophic community of an estuarine biofilm.

Authors:  Andreas Nocker; Joe E Lepo; Richard A Snyder
Journal:  Appl Environ Microbiol       Date:  2004-11       Impact factor: 4.792

8.  Evaluation of universal probes and primer sets for assessing total bacterial load in clinical samples: general implications and practical use in endodontic antimicrobial therapy.

Authors:  H P Horz; M E Vianna; B P F A Gomes; G Conrads
Journal:  J Clin Microbiol       Date:  2005-10       Impact factor: 5.948

9.  Bacterial community composition in different sediments from the Eastern Mediterranean Sea: a comparison of four 16S ribosomal DNA clone libraries.

Authors:  Paraskevi N Polymenakou; Stefan Bertilsson; Anastasios Tselepides; Euripides G Stephanou
Journal:  Microb Ecol       Date:  2005-11-23       Impact factor: 4.552

10.  Flavobacteria blooms in four eutrophic lakes: linking population dynamics of freshwater bacterioplankton to resource availability.

Authors:  Alexander Eiler; Stefan Bertilsson
Journal:  Appl Environ Microbiol       Date:  2007-04-13       Impact factor: 4.792
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