Literature DB >> 16179466

Noise in gene expression: origins, consequences, and control.

Jonathan M Raser1, Erin K O'Shea.   

Abstract

Genetically identical cells and organisms exhibit remarkable diversity even when they have identical histories of environmental exposure. Noise, or variation, in the process of gene expression may contribute to this phenotypic variability. Recent studies suggest that this noise has multiple sources, including the stochastic or inherently random nature of the biochemical reactions of gene expression. In this review, we summarize noise terminology and comment on recent investigations into the sources, consequences, and control of noise in gene expression.

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Year:  2005        PMID: 16179466      PMCID: PMC1360161          DOI: 10.1126/science.1105891

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  36 in total

1.  The effect of transcription and translation initiation frequencies on the stochastic fluctuations in prokaryotic gene expression.

Authors:  A M Kierzek; J Zaim; P Zielenkiewicz
Journal:  J Biol Chem       Date:  2000-11-02       Impact factor: 5.157

2.  Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations.

Authors:  T B Kepler; T C Elston
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

3.  Intrinsic noise in gene regulatory networks.

Authors:  M Thattai; A van Oudenaarden
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-03       Impact factor: 11.205

4.  Control of stochasticity in eukaryotic gene expression.

Authors:  Jonathan M Raser; Erin K O'Shea
Journal:  Science       Date:  2004-05-27       Impact factor: 47.728

5.  No transcription-translation feedback in circadian rhythm of KaiC phosphorylation.

Authors:  Jun Tomita; Masato Nakajima; Takao Kondo; Hideo Iwasaki
Journal:  Science       Date:  2004-11-18       Impact factor: 47.728

6.  Regulation of IL-4 expression by activation of individual alleles.

Authors:  I Rivière; M J Sunshine; D R Littman
Journal:  Immunity       Date:  1998-08       Impact factor: 31.745

Review 7.  One neuron-one receptor rule in the mouse olfactory system.

Authors:  Shou Serizawa; Kazunari Miyamichi; Hitoshi Sakano
Journal:  Trends Genet       Date:  2004-12       Impact factor: 11.639

8.  A cat cloned by nuclear transplantation.

Authors:  T Shin; D Kraemer; J Pryor; L Liu; J Rugila; L Howe; S Buck; K Murphy; L Lyons; M Westhusin
Journal:  Nature       Date:  2002-02-14       Impact factor: 49.962

9.  Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae.

Authors:  Manolis Kellis; Bruce W Birren; Eric S Lander
Journal:  Nature       Date:  2004-03-07       Impact factor: 49.962

10.  Noise minimization in eukaryotic gene expression.

Authors:  Hunter B Fraser; Aaron E Hirsh; Guri Giaever; Jochen Kumm; Michael B Eisen
Journal:  PLoS Biol       Date:  2004-04-27       Impact factor: 8.029

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  573 in total

1.  A genomic model of condition-specific nucleosome behavior explains transcriptional activity in yeast.

Authors:  Judith B Zaugg; Nicholas M Luscombe
Journal:  Genome Res       Date:  2011-09-19       Impact factor: 9.043

2.  Plasticity of the myelination genomic fabric.

Authors:  Sanda Iacobas; Neil M Thomas; Dumitru A Iacobas
Journal:  Mol Genet Genomics       Date:  2012-01-13       Impact factor: 3.291

Review 3.  The unexpected traits associated with core promoter elements.

Authors:  Rivka Dikstein
Journal:  Transcription       Date:  2011 Sep-Oct

4.  Stochastic steady state gain in a gene expression process with mRNA degradation control.

Authors:  Hiroyuki Kuwahara; Russell Schwartz
Journal:  J R Soc Interface       Date:  2012-01-11       Impact factor: 4.118

Review 5.  Transcriptional activators and activation mechanisms.

Authors:  Jun Ma
Journal:  Protein Cell       Date:  2011-12-17       Impact factor: 14.870

6.  Genetic control of gene expression in whole blood and lymphoblastoid cell lines is largely independent.

Authors:  Joseph E Powell; Anjali K Henders; Allan F McRae; Margaret J Wright; Nicholas G Martin; Emmanouil T Dermitzakis; Grant W Montgomery; Peter M Visscher
Journal:  Genome Res       Date:  2011-12-19       Impact factor: 9.043

Review 7.  Error prevention and mitigation as forces in the evolution of genes and genomes.

Authors:  Tobias Warnecke; Laurence D Hurst
Journal:  Nat Rev Genet       Date:  2011-11-18       Impact factor: 53.242

Review 8.  Plasticity of defensive behavior and fear in early development.

Authors:  Christoph P Wiedenmayer
Journal:  Neurosci Biobehav Rev       Date:  2008-11-27       Impact factor: 8.989

9.  Global view of bionetwork dynamics: adaptive landscape.

Authors:  Ping Ao
Journal:  J Genet Genomics       Date:  2009-02       Impact factor: 4.275

10.  Hepatic Niemann-Pick C1-like 1 regulates biliary cholesterol concentration and is a target of ezetimibe.

Authors:  Ryan E Temel; Weiqing Tang; Yinyan Ma; Lawrence L Rudel; Mark C Willingham; Yiannis A Ioannou; Joanna P Davies; Lisa-Mari Nilsson; Liqing Yu
Journal:  J Clin Invest       Date:  2007-07       Impact factor: 14.808

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