Literature DB >> 22246408

Plasticity of the myelination genomic fabric.

Sanda Iacobas1, Neil M Thomas, Dumitru A Iacobas.   

Abstract

This study aimed to quantify the influence of the astrocyte proximity on myelination genomic fabric (MYE) of oligodendrocytes, defined as the most interconnected and stably expressed gene web responsible for myelination. Such quantitation is important to evaluate whether astrocyte signaling may contribute to demyelination when impaired and remyelination when properly restored. For this, we compared changes in the gene expression profiles of immortalized precursor oligodendrocytes (Oli-neu), stimulated to differentiate by the proximity of nontouching astrocytes or treatment with db-cAMP. In a previous paper, we reported that the astrocyte proximity upregulated or turned-on a large number of myelination genes and substantially enriched the Ca(2+)-signaling and cytokine receptor regulatory networks of MYE in Oli-neu cells. Here, we introduce the "transcriptomic distance" to evaluate fabric remodeling and "pair-wise relevance" to identify the most influential gene pairs. Together with the prominence gene analysis used to select and rank the fabric genes, these novel analytical tools provide a comprehensively quantitative view of the physio/pathological transformations of the transcriptomic programs of myelinating cells. Applied to our data, the analyses revealed not only that the astrocyte neighborhood is a substantially more powerful regulator of myelination than the differentiating treatment but also the molecular mechanisms of the two differentiating paradigms are different. By inducing a profound remodeling of MYE and regulatory transcriptomic networks, the astrocyte-oligodendrocyte intercommunication may be considered as a major player in both pathophysiology and therapy of neurodegenerative diseases related to myelination.

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Year:  2012        PMID: 22246408     DOI: 10.1007/s00438-012-0673-0

Source DB:  PubMed          Journal:  Mol Genet Genomics        ISSN: 1617-4623            Impact factor:   3.291


  62 in total

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Journal:  Mol Genet Genomics       Date:  2010-10-01       Impact factor: 3.291

Review 2.  Effects of deficiency of the G protein Gsα on energy and glucose homeostasis.

Authors:  Min Chen; Nicholas M Nemechek; Eralda Mema; Jie Wang; Lee S Weinstein
Journal:  Eur J Pharmacol       Date:  2011-01-03       Impact factor: 4.432

3.  Human Connexin 32, a gap junction protein altered in the X-linked form of Charcot-Marie-Tooth disease, is directly regulated by the transcription factor SOX10.

Authors:  N Bondurand; M Girard; V Pingault; N Lemort; O Dubourg; M Goossens
Journal:  Hum Mol Genet       Date:  2001-11-15       Impact factor: 6.150

Review 4.  Nrg1/ErbB signaling networks in Schwann cell development and myelination.

Authors:  Jason Newbern; Carmen Birchmeier
Journal:  Semin Cell Dev Biol       Date:  2010-09-09       Impact factor: 7.727

Review 5.  Neurotransmitter phenotype plasticity: an unexpected mechanism in the toolbox of network activity homeostasis.

Authors:  Michaël Demarque; Nicholas C Spitzer
Journal:  Dev Neurobiol       Date:  2012-01       Impact factor: 3.964

Review 6.  The role of osteopontin in experimental autoimmune encephalomyelitis (EAE) and multiple sclerosis (MS).

Authors:  Manjit Braitch; Cris S Constantinescu
Journal:  Inflamm Allergy Drug Targets       Date:  2010-09

7.  Cord blood administration induces oligodendrocyte survival through alterations in gene expression.

Authors:  D D Rowe; C C Leonardo; A A Hall; M D Shahaduzzaman; L A Collier; A E Willing; K R Pennypacker
Journal:  Brain Res       Date:  2010-09-29       Impact factor: 3.252

8.  Myelin gene regulatory factor is a critical transcriptional regulator required for CNS myelination.

Authors:  Ben Emery; Dritan Agalliu; John D Cahoy; Trent A Watkins; Jason C Dugas; Sara B Mulinyawe; Adilijan Ibrahim; Keith L Ligon; David H Rowitch; Ben A Barres
Journal:  Cell       Date:  2009-07-10       Impact factor: 41.582

9.  Heart rhythm genomic fabric in hypoxia.

Authors:  Dumitru A Iacobas; Sanda Iacobas; Gabriel G Haddad
Journal:  Biochem Biophys Res Commun       Date:  2009-12-31       Impact factor: 3.575

10.  Identification of a gene regulatory network necessary for the initiation of oligodendrocyte differentiation.

Authors:  Victoria A Swiss; Tung Nguyen; Jason Dugas; Adiljan Ibrahim; Ben Barres; Ioannis P Androulakis; Patrizia Casaccia
Journal:  PLoS One       Date:  2011-04-07       Impact factor: 3.240

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  8 in total

Review 1.  Prenatal corticosteroids modify glutamatergic and GABAergic synapse genomic fabric: insights from a novel animal model of infantile spasms.

Authors:  D A Iacobas; S Iacobas; T Chachua; C Goletiani; G Sidyelyeva; J Velíšková; L Velíšek
Journal:  J Neuroendocrinol       Date:  2013-11       Impact factor: 3.627

2.  Estrogen Protects Neurotransmission Transcriptome During Status Epilepticus.

Authors:  Dumitru A Iacobas; Sanda Iacobas; Nino Nebieridze; Libor Velíšek; Jana Velíšková
Journal:  Front Neurosci       Date:  2018-06-20       Impact factor: 4.677

3.  Coordinated Activity of Transcriptional Networks Responding to the Pattern of Action Potential Firing in Neurons.

Authors:  Dumitru A Iacobas; Sanda Iacobas; Philip R Lee; Jonathan E Cohen; R Douglas Fields
Journal:  Genes (Basel)       Date:  2019-09-26       Impact factor: 4.096

4.  Transcriptomic uniqueness and commonality of the ion channels and transporters in the four heart chambers.

Authors:  Sanda Iacobas; Bogdan Amuzescu; Dumitru A Iacobas
Journal:  Sci Rep       Date:  2021-02-02       Impact factor: 4.379

5.  Genomic Fabric Remodeling in Metastatic Clear Cell Renal Cell Carcinoma (ccRCC): A New Paradigm and Proposal for a Personalized Gene Therapy Approach.

Authors:  Dumitru A Iacobas; Victoria E Mgbemena; Sanda Iacobas; Kareena M Menezes; Huichen Wang; Premkumar B Saganti
Journal:  Cancers (Basel)       Date:  2020-12-08       Impact factor: 6.639

6.  Gene master regulators of papillary and anaplastic thyroid cancers.

Authors:  Dumitru A Iacobas; Neha Y Tuli; Sanda Iacobas; John K Rasamny; Augustine Moscatello; Jan Geliebter; Raj K Tiwari
Journal:  Oncotarget       Date:  2017-12-19

7.  ACTH and PMX53 recover synaptic transcriptome alterations in a rat model of infantile spasms.

Authors:  Dumitru A Iacobaş; Tamar Chachua; Sanda Iacobaş; Melissa J Benson; Karin Borges; Jana Velíšková; Libor Velíšek
Journal:  Sci Rep       Date:  2018-04-10       Impact factor: 4.379

8.  Cellular Environment Remodels the Genomic Fabrics of Functional Pathways in Astrocytes.

Authors:  Dumitru A Iacobas; Sanda Iacobas; Randy F Stout; David C Spray
Journal:  Genes (Basel)       Date:  2020-05-07       Impact factor: 4.096

  8 in total

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