Literature DB >> 15166317

Control of stochasticity in eukaryotic gene expression.

Jonathan M Raser1, Erin K O'Shea.   

Abstract

Noise, or random fluctuations, in gene expression may produce variability in cellular behavior. To measure the noise intrinsic to eukaryotic gene expression, we quantified the differences in expression of two alleles in a diploid cell. We found that such noise is gene-specific and not dependent on the regulatory pathway or absolute rate of expression. We propose a model in which the balance between promoter activation and transcription influences the variability in messenger RNA levels. To confirm the predictions of our model, we identified both cis- and trans-acting mutations that alter the noise of gene expression. These mutations suggest that noise is an evolvable trait that can be optimized to balance fidelity and diversity in eukaryotic gene expression.

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Year:  2004        PMID: 15166317      PMCID: PMC1410811          DOI: 10.1126/science.1098641

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  21 in total

1.  Intrinsic noise in gene regulatory networks.

Authors:  M Thattai; A van Oudenaarden
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-03       Impact factor: 11.205

2.  Regulation of noise in the expression of a single gene.

Authors:  Ertugrul M Ozbudak; Mukund Thattai; Iren Kurtser; Alan D Grossman; Alexander van Oudenaarden
Journal:  Nat Genet       Date:  2002-04-22       Impact factor: 38.330

3.  Haploinsufficiency at the Nkx3.1 locus. A paradigm for stochastic, dosage-sensitive gene regulation during tumor initiation.

Authors:  Jeffrey A Magee; Sarki A Abdulkadir; Jeffrey Milbrandt
Journal:  Cancer Cell       Date:  2003-03       Impact factor: 31.743

4.  Noise in eukaryotic gene expression.

Authors:  William J Blake; Mads KAErn; Charles R Cantor; J J Collins
Journal:  Nature       Date:  2003-04-10       Impact factor: 49.962

Review 5.  Control, exploitation and tolerance of intracellular noise.

Authors:  Christopher V Rao; Denise M Wolf; Adam P Arkin
Journal:  Nature       Date:  2002-11-14       Impact factor: 49.962

6.  Stochastic gene expression in a single cell.

Authors:  Michael B Elowitz; Arnold J Levine; Eric D Siggia; Peter S Swain
Journal:  Science       Date:  2002-08-16       Impact factor: 47.728

7.  Intrinsic and extrinsic contributions to stochasticity in gene expression.

Authors:  Peter S Swain; Michael B Elowitz; Eric D Siggia
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-17       Impact factor: 11.205

8.  Regulation of chromatin remodeling by inositol polyphosphates.

Authors:  David J Steger; Elizabeth S Haswell; Aimee L Miller; Susan R Wente; Erin K O'Shea
Journal:  Science       Date:  2002-11-14       Impact factor: 47.728

9.  Increasing the rate of chromatin remodeling and gene activation--a novel role for the histone acetyltransferase Gcn5.

Authors:  S Barbaric; J Walker; A Schmid; J Q Svejstrup; W Hörz
Journal:  EMBO J       Date:  2001-09-03       Impact factor: 11.598

10.  Multiple mechanistically distinct functions of SAGA at the PHO5 promoter.

Authors:  Slobodan Barbaric; Hans Reinke; Wolfram Hörz
Journal:  Mol Cell Biol       Date:  2003-05       Impact factor: 4.272

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  603 in total

1.  Heterogeneous expression of the virulence-related adhesin Epa1 between individual cells and strains of the pathogen Candida glabrata.

Authors:  Samantha C Halliwell; Matthew C A Smith; Philippa Muston; Sara L Holland; Simon V Avery
Journal:  Eukaryot Cell       Date:  2011-12-02

2.  Evolutionary origins of transcription factor binding site clusters.

Authors:  Xin He; Thyago S P C Duque; Saurabh Sinha
Journal:  Mol Biol Evol       Date:  2011-11-10       Impact factor: 16.240

3.  Biography of Erin K. O'Shea.

Authors:  Melissa Marino
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-28       Impact factor: 11.205

Review 4.  Imaging gene expression in single living cells.

Authors:  Yaron Shav-Tal; Robert H Singer; Xavier Darzacq
Journal:  Nat Rev Mol Cell Biol       Date:  2004-10       Impact factor: 94.444

Review 5.  The unexpected traits associated with core promoter elements.

Authors:  Rivka Dikstein
Journal:  Transcription       Date:  2011 Sep-Oct

6.  Stochastic steady state gain in a gene expression process with mRNA degradation control.

Authors:  Hiroyuki Kuwahara; Russell Schwartz
Journal:  J R Soc Interface       Date:  2012-01-11       Impact factor: 4.118

7.  A common repressor pool results in indeterminacy of extrinsic noise.

Authors:  Michail Stamatakis; Rhys M Adams; Gábor Balázsi
Journal:  Chaos       Date:  2011-12       Impact factor: 3.642

8.  Identifying sources of variation and the flow of information in biochemical networks.

Authors:  Clive G Bowsher; Peter S Swain
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-23       Impact factor: 11.205

Review 9.  Epigenetic memories: structural marks or active circuits?

Authors:  Floriane Nicol-Benoît; Pascale Le-Goff; Yves Le-Dréan; Florence Demay; Farzad Pakdel; Gilles Flouriot; Denis Michel
Journal:  Cell Mol Life Sci       Date:  2012-02-14       Impact factor: 9.261

10.  Single-cell systems biology: probing the basic unit of information flow.

Authors:  Simona Patange; Michelle Girvan; Daniel R Larson
Journal:  Curr Opin Syst Biol       Date:  2017-12-06
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