Literature DB >> 22094950

Error prevention and mitigation as forces in the evolution of genes and genomes.

Tobias Warnecke1, Laurence D Hurst.   

Abstract

Why are short introns rarely a multiple of three nucleotides long? Why do essential genes cluster? Why are genes in operons often lined up in the order in which they are needed in the encoded pathway? In this Opinion article, we argue that these and many other - ostensibly disparate - observations are all pieces of an emerging picture in which multiple aspects of gene anatomy and genome architecture have evolved in response to error-prone gene expression.

Mesh:

Year:  2011        PMID: 22094950     DOI: 10.1038/nrg3092

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  58 in total

1.  An mRNA surveillance mechanism that eliminates transcripts lacking termination codons.

Authors:  Pamela A Frischmeyer; Ambro van Hoof; Kathryn O'Donnell; Anthony L Guerrerio; Roy Parker; Harry C Dietz
Journal:  Science       Date:  2002-03-22       Impact factor: 47.728

Review 2.  Alternative splicing and evolution.

Authors:  Stephanie Boue; Ivica Letunic; Peer Bork
Journal:  Bioessays       Date:  2003-11       Impact factor: 4.345

3.  Design principles of a bacterial signalling network.

Authors:  Markus Kollmann; Linda Løvdok; Kilian Bartholomé; Jens Timmer; Victor Sourjik
Journal:  Nature       Date:  2005-11-24       Impact factor: 49.962

4.  Contributions of low molecule number and chromosomal positioning to stochastic gene expression.

Authors:  Attila Becskei; Benjamin B Kaufmann; Alexander van Oudenaarden
Journal:  Nat Genet       Date:  2005-08-07       Impact factor: 38.330

Review 5.  RNA quality control in eukaryotes.

Authors:  Meenakshi K Doma; Roy Parker
Journal:  Cell       Date:  2007-11-16       Impact factor: 41.582

6.  Two strategies for gene regulation by promoter nucleosomes.

Authors:  Itay Tirosh; Naama Barkai
Journal:  Genome Res       Date:  2008-04-30       Impact factor: 9.043

7.  Role of translational coupling in robustness of bacterial chemotaxis pathway.

Authors:  Linda Løvdok; Kajetan Bentele; Nikita Vladimirov; Anette Müller; Ferencz S Pop; Dirk Lebiedz; Markus Kollmann; Victor Sourjik
Journal:  PLoS Biol       Date:  2009-08-18       Impact factor: 8.029

8.  Evolution of chromosome organization driven by selection for reduced gene expression noise.

Authors:  Nizar N Batada; Laurence D Hurst
Journal:  Nat Genet       Date:  2007-08       Impact factor: 38.330

9.  Unique cost dynamics elucidate the role of frameshifting errors in promoting translational robustness.

Authors:  Tobias Warnecke; Yang Huang; Teresa M Przytycka; Laurence D Hurst
Journal:  Genome Biol Evol       Date:  2010-08-05       Impact factor: 3.416

10.  DNA sequences shaped by selection for stability.

Authors:  Martin Ackermann; Lin Chao
Journal:  PLoS Genet       Date:  2006-02-24       Impact factor: 5.917

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  23 in total

1.  Molecular evolution: dealing with nonsense.

Authors:  Tanita Casci
Journal:  Nat Rev Genet       Date:  2011-11-18       Impact factor: 53.242

2.  Drift Barriers to Quality Control When Genes Are Expressed at Different Levels.

Authors:  Kun Xiong; Jay P McEntee; David J Porfirio; Joanna Masel
Journal:  Genetics       Date:  2016-11-11       Impact factor: 4.562

3.  From mechanisms to therapy: RNA processing's impact on human genetics.

Authors:  Luiz O Penalva; Jeremy R Sanford
Journal:  Hum Genet       Date:  2017-09       Impact factor: 4.132

Review 4.  Determinants of the rate of protein sequence evolution.

Authors:  Jianzhi Zhang; Jian-Rong Yang
Journal:  Nat Rev Genet       Date:  2015-06-09       Impact factor: 53.242

Review 5.  Gene product diversity: adaptive or not?

Authors:  Jianzhi Zhang; Chuan Xu
Journal:  Trends Genet       Date:  2022-05-28       Impact factor: 11.821

6.  Codon Distribution in Error-Detecting Circular Codes.

Authors:  Elena Fimmel; Lutz Strüngmann
Journal:  Life (Basel)       Date:  2016-03-15

7.  Mammalian Alternative Translation Initiation Is Mostly Nonadaptive.

Authors:  Chuan Xu; Jianzhi Zhang
Journal:  Mol Biol Evol       Date:  2020-07-01       Impact factor: 16.240

8.  The Immune Signaling Adaptor LAT Contributes to the Neuroanatomical Phenotype of 16p11.2 BP2-BP3 CNVs.

Authors:  Maria Nicla Loviglio; Thomas Arbogast; Aia Elise Jønch; Stephan C Collins; Konstantin Popadin; Camille S Bonnet; Giuliana Giannuzzi; Anne M Maillard; Sébastien Jacquemont; Binnaz Yalcin; Nicholas Katsanis; Christelle Golzio; Alexandre Reymond
Journal:  Am J Hum Genet       Date:  2017-09-28       Impact factor: 11.025

9.  High-throughput screen of essential gene modules in Mycobacterium tuberculosis: a bibliometric approach.

Authors:  Guangyu Xu; Bin Liu; Fang Wang; Chengguo Wei; Ying Zhang; Jiyao Sheng; Guoqing Wang; Fan Li
Journal:  BMC Infect Dis       Date:  2013-05-20       Impact factor: 3.090

10.  The Evolutionary Potential of Phenotypic Mutations.

Authors:  Hayato Yanagida; Ariel Gispan; Noam Kadouri; Shelly Rozen; Michal Sharon; Naama Barkai; Dan S Tawfik
Journal:  PLoS Genet       Date:  2015-08-05       Impact factor: 5.917

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