Literature DB >> 16118636

Gene expression profiling in single cells within tissue.

Paola Capodieci1, Michael Donovan, Heidi Buchinsky, Yusuf Jeffers, Carlos Cordon-Cardo, William Gerald, Jon Edelson, Shailesh M Shenoy, Robert H Singer.   

Abstract

We developed a robust multiplex fluorescent in situ hybridization (FISH) technique in archival formalin-fixed, paraffin-embedded (FFPE) human tissue sections while preserving the microanatomical context. This identifies single-cell gene expression patterns by probing multiple, unique nascent RNA transcripts and yields predictive quantitative gene expression signatures.

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Year:  2005        PMID： 16118636      PMCID： PMC1976602          DOI： 10.1038/nmeth786

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


  15 in total

Review 1.  Genomics, gene expression and DNA arrays.

Authors:  D J Lockhart; E A Winzeler
Journal:  Nature       Date:  2000-06-15       Impact factor: 49.962

2.  Single-cell gene expression profiling.

Authors:  Jeffrey M Levsky; Shailesh M Shenoy; Rossanna C Pezo; Robert H Singer
Journal:  Science       Date:  2002-08-02       Impact factor: 47.728

3.  Loss of the tumor suppressor PML in human cancers of multiple histologic origins.

Authors:  Carmela Gurrieri; Paola Capodieci; Rosa Bernardi; Pier Paolo Scaglioni; Khedoudja Nafa; Laura J Rush; David A Verbel; Carlos Cordon-Cardo; Pier Paolo Pandolfi
Journal:  J Natl Cancer Inst       Date:  2004-02-18       Impact factor: 13.506

4.  Visualization of single RNA transcripts in situ.

Authors:  A M Femino; F S Fay; K Fogarty; R H Singer
Journal:  Science       Date:  1998-04-24       Impact factor: 47.728

5.  A multigene assay to predict recurrence of tamoxifen-treated, node-negative breast cancer.

Authors:  Soonmyung Paik; Steven Shak; Gong Tang; Chungyeul Kim; Joffre Baker; Maureen Cronin; Frederick L Baehner; Michael G Walker; Drew Watson; Taesung Park; William Hiller; Edwin R Fisher; D Lawrence Wickerham; John Bryant; Norman Wolmark
Journal:  N Engl J Med       Date:  2004-12-10       Impact factor: 91.245

6.  Gene expression levels in small specimens from patients detected using oligonucleotide arrays.

Authors:  Katrin Hoffmann; Martin J Firth; Joseph R Freitas; Nicholas H de Klerk; Ursula R Kees
Journal:  Mol Biotechnol       Date:  2005-01       Impact factor: 2.695

7.  p300 modulates nuclear morphology in prostate cancer.

Authors:  Jose D Debes; Thomas J Sebo; Hannelore V Heemers; Benjamin R Kipp; De Anna L Haugen; Christine M Lohse; Donald J Tindall
Journal:  Cancer Res       Date:  2005-02-01       Impact factor: 12.701

8.  DD3: a new prostate-specific gene, highly overexpressed in prostate cancer.

Authors:  M J Bussemakers; A van Bokhoven; G W Verhaegh; F P Smit; H F Karthaus; J A Schalken; F M Debruyne; N Ru; W B Isaacs
Journal:  Cancer Res       Date:  1999-12-01       Impact factor: 12.701

Review 9.  Gene profiling--chances and challenges.

Authors:  G Enders
Journal:  Acta Neurochir Suppl       Date:  2004

10.  Gene expression profiling predicts clinical outcome of prostate cancer.

Authors:  Gennadi V Glinsky; Anna B Glinskii; Andrew J Stephenson; Robert M Hoffman; William L Gerald
Journal:  J Clin Invest       Date:  2004-03       Impact factor: 14.808
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  28 in total

Review 1.  Single cell analysis: the new frontier in 'omics'.

Authors:  Daojing Wang; Steven Bodovitz
Journal:  Trends Biotechnol       Date:  2010-04-29       Impact factor: 19.536

2.  Classical versus stochastic kinetics modeling of biochemical reaction systems.

Authors:  John Goutsias
Journal:  Biophys J       Date:  2007-01-11       Impact factor: 4.033

Review 3.  Applications of high-throughput RNA interference screens to problems in cell and developmental biology.

Authors:  Norbert Perrimon; Bernard Mathey-Prevot
Journal:  Genetics       Date:  2007-01       Impact factor: 4.562

4.  Integrated microfluidic bioprocessor for single-cell gene expression analysis.

Authors:  Nicholas M Toriello; Erik S Douglas; Numrin Thaitrong; Sonny C Hsiao; Matthew B Francis; Carolyn R Bertozzi; Richard A Mathies
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-15       Impact factor: 11.205

5.  Cell biology of mRNA decay.

Authors:  David Grünwald; Robert H Singer; Kevin Czaplinski
Journal:  Methods Enzymol       Date:  2008       Impact factor: 1.600

6.  Single-cell transcription site activation predicts chemotherapy response in human colorectal tumors.

Authors:  Rossanna C Pezo; Saumil J Gandhi; L Andrew Shirley; Richard G Pestell; Leonard H Augenlicht; Robert H Singer
Journal:  Cancer Res       Date:  2008-07-01       Impact factor: 12.701

7.  The spatial order of transcription in mammalian cells.

Authors:  Jeffrey M Levsky; Shailesh M Shenoy; Jonathan R Chubb; Charles B Hall; Paola Capodieci; Robert H Singer
Journal:  J Cell Biochem       Date:  2007-10-15       Impact factor: 4.429

8.  Mapping a multiplexed zoo of mRNA expression.

Authors:  Harry M T Choi; Colby R Calvert; Naeem Husain; David Huss; Julius C Barsi; Benjamin E Deverman; Ryan C Hunter; Mihoko Kato; S Melanie Lee; Anna C T Abelin; Adam Z Rosenthal; Omar S Akbari; Yuwei Li; Bruce A Hay; Paul W Sternberg; Paul H Patterson; Eric H Davidson; Sarkis K Mazmanian; David A Prober; Matt van de Rijn; Jared R Leadbetter; Dianne K Newman; Carol Readhead; Marianne E Bronner; Barbara Wold; Rusty Lansford; Tatjana Sauka-Spengler; Scott E Fraser; Niles A Pierce
Journal:  Development       Date:  2016-10-01       Impact factor: 6.868

Review 9.  Nuclear microenvironment in cancer diagnosis and treatment.

Authors:  Rossanna C Pezo; Robert H Singer
Journal:  J Cell Biochem       Date:  2008-08-15       Impact factor: 4.429

Review 10.  Progress and opportunities in molecular pathological epidemiology of colorectal premalignant lesions.

Authors:  Paul Lochhead; Andrew T Chan; Edward Giovannucci; Charles S Fuchs; Kana Wu; Reiko Nishihara; Michael O'Brien; Shuji Ogino
Journal:  Am J Gastroenterol       Date:  2014-06-17       Impact factor: 10.864
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