Literature DB >> 17244760

Applications of high-throughput RNA interference screens to problems in cell and developmental biology.

Norbert Perrimon1, Bernard Mathey-Prevot.   

Abstract

RNA interference (RNAi) in tissue culture cells has emerged as an excellent methodology for identifying gene functions systematically and in an unbiased manner. Here, we describe how RNAi high-throughput screening (HTS) in Drosophila cells are currently being performed and emphasize the strengths and weaknesses of the approach. Further, to demonstrate the versatility of the technology, we provide examples of the various applications of the method to problems in signal transduction and cell and developmental biology. Finally, we discuss emerging technological advances that will extend RNAi-based screening methods.

Entities:  

Mesh:

Year:  2007        PMID: 17244760      PMCID: PMC1775003          DOI: 10.1534/genetics.106.069963

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  71 in total

1.  One hundred years of high-throughput Drosophila research.

Authors:  Mathias Beller; Brian Oliver
Journal:  Chromosome Res       Date:  2006       Impact factor: 5.239

2.  Genome-wide RNAi screen of Ca(2+) influx identifies genes that regulate Ca(2+) release-activated Ca(2+) channel activity.

Authors:  Shenyuan L Zhang; Andriy V Yeromin; Xiang H-F Zhang; Ying Yu; Olga Safrina; Aubin Penna; Jack Roos; Kenneth A Stauderman; Michael D Cahalan
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-02       Impact factor: 11.205

3.  Prevalence of off-target effects in Drosophila RNA interference screens.

Authors:  Yong Ma; Adrian Creanga; Lawrence Lum; Philip A Beachy
Journal:  Nature       Date:  2006-09-10       Impact factor: 49.962

4.  Minimizing the risk of reporting false positives in large-scale RNAi screens.

Authors:  Christophe J Echeverri; Philip A Beachy; Buzz Baum; Michael Boutros; Frank Buchholz; Sumit K Chanda; Julian Downward; Jan Ellenberg; Andrew G Fraser; Nir Hacohen; William C Hahn; Aimee L Jackson; Amy Kiger; Peter S Linsley; Lawrence Lum; Yong Ma; Bernard Mathey-Prévôt; David E Root; David M Sabatini; Jussi Taipale; Norbert Perrimon; René Bernards
Journal:  Nat Methods       Date:  2006-10       Impact factor: 28.547

5.  A genome-wide Drosophila RNAi screen identifies DYRK-family kinases as regulators of NFAT.

Authors:  Yousang Gwack; Sonia Sharma; Julie Nardone; Bogdan Tanasa; Alina Iuga; Sonal Srikanth; Heidi Okamura; Diana Bolton; Stefan Feske; Patrick G Hogan; Anjana Rao
Journal:  Nature       Date:  2006-03-01       Impact factor: 49.962

6.  Identification of JAK/STAT signalling components by genome-wide RNA interference.

Authors:  Patrick Müller; David Kuttenkeuler; Viola Gesellchen; Martin P Zeidler; Michael Boutros
Journal:  Nature       Date:  2005-08-11       Impact factor: 49.962

7.  Evidence of off-target effects associated with long dsRNAs in Drosophila melanogaster cell-based assays.

Authors:  Meghana M Kulkarni; Matthew Booker; Serena J Silver; Adam Friedman; Pengyu Hong; Norbert Perrimon; Bernard Mathey-Prevot
Journal:  Nat Methods       Date:  2006-10       Impact factor: 28.547

8.  Genome-wide RNAi analysis of JAK/STAT signaling components in Drosophila.

Authors:  Gyeong-Hun Baeg; Rui Zhou; Norbert Perrimon
Journal:  Genes Dev       Date:  2005-07-29       Impact factor: 11.361

9.  Genome-wide RNAi screen for host factors required for intracellular bacterial infection.

Authors:  Hervé Agaisse; Laura S Burrack; Jennifer A Philips; Eric J Rubin; Norbert Perrimon; Darren E Higgins
Journal:  Science       Date:  2005-07-14       Impact factor: 47.728

10.  Systematic mapping of genetic interactions in Caenorhabditis elegans identifies common modifiers of diverse signaling pathways.

Authors:  Ben Lehner; Catriona Crombie; Julia Tischler; Angelo Fortunato; Andrew G Fraser
Journal:  Nat Genet       Date:  2006-07-16       Impact factor: 38.330

View more
  37 in total

1.  Bottlenecks caused by software gaps in miRNA and RNAi research.

Authors:  Sean Ekins; Ron Shigeta; Barry A Bunin
Journal:  Pharm Res       Date:  2012-02-24       Impact factor: 4.200

Review 2.  In vivo RNAi: today and tomorrow.

Authors:  Norbert Perrimon; Jian-Quan Ni; Lizabeth Perkins
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-06-09       Impact factor: 10.005

Review 3.  High-throughput analysis of signals regulating stem cell fate and function.

Authors:  Gregory H Underhill; Sangeeta N Bhatia
Journal:  Curr Opin Chem Biol       Date:  2007-07-25       Impact factor: 8.822

4.  Characterizing heterogeneous cellular responses to perturbations.

Authors:  Michael D Slack; Elisabeth D Martinez; Lani F Wu; Steven J Altschuler
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-03       Impact factor: 11.205

Review 5.  Genomic RNAi screening in Drosophila S2 cells: what have we learned about host-pathogen interactions?

Authors:  Sara Cherry
Journal:  Curr Opin Microbiol       Date:  2008-06-06       Impact factor: 7.934

6.  Adventitious viruses persistently infect three commonly used mosquito cell lines.

Authors:  James Weger-Lucarelli; Claudia Rückert; Nathan D Grubaugh; Michael J Misencik; Philip M Armstrong; Mark D Stenglein; Gregory D Ebel; Doug E Brackney
Journal:  Virology       Date:  2018-06-26       Impact factor: 3.616

Review 7.  Statistical methods for analysis of high-throughput RNA interference screens.

Authors:  Amanda Birmingham; Laura M Selfors; Thorsten Forster; David Wrobel; Caleb J Kennedy; Emma Shanks; Javier Santoyo-Lopez; Dara J Dunican; Aideen Long; Dermot Kelleher; Queta Smith; Roderick L Beijersbergen; Peter Ghazal; Caroline E Shamu
Journal:  Nat Methods       Date:  2009-08       Impact factor: 28.547

8.  Culture of Drosophila primary cells dissociated from gastrula embryos and their use in RNAi screening.

Authors:  Jianwu Bai; Katharine J Sepp; Norbert Perrimon
Journal:  Nat Protoc       Date:  2009-09-24       Impact factor: 13.491

Review 9.  Insights to transcriptional networks by using high throughput RNAi strategies.

Authors:  Jaakko Mattila; Oscar Puig
Journal:  Brief Funct Genomics       Date:  2009-12-01       Impact factor: 4.241

10.  Exploring prion protein biology in flies: genetics and beyond.

Authors:  Diego E Rincon-Limas; Sergio Casas-Tinto; Pedro Fernandez-Funez
Journal:  Prion       Date:  2010-01-30       Impact factor: 3.931

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.