Literature DB >> 19111194

Cell biology of mRNA decay.

David Grünwald1, Robert H Singer, Kevin Czaplinski.   

Abstract

Studying single mRNA molecules has added new dimensions to our understanding of gene expression and the life cycle of mRNA in cells. Advances in microscopes and detection technology have opened access to single molecule research to most researchers interested in molecular biology. Here we provide an overview technique for single molecule studies of RNA in either fixed samples or in living cells. As part of a volume on mRNA turnover, it is increasingly relevant, because many of the recent advances in studies of mRNA turnover have suggested that there is non-homogeneous distribution of turnover factors in the cell. For this reason, understanding of spatial relationships between mRNA and mRNA turnover factors should enrich our understanding of this process.

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Year:  2008        PMID: 19111194      PMCID: PMC3152983          DOI: 10.1016/S0076-6879(08)02627-X

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  41 in total

1.  Precise nanometer localization analysis for individual fluorescent probes.

Authors:  Russell E Thompson; Daniel R Larson; Watt W Webb
Journal:  Biophys J       Date:  2002-05       Impact factor: 4.033

2.  Visualization of single molecules of mRNA in situ.

Authors:  Andrea M Femino; Kevin Fogarty; Lawrence M Lifshitz; Walter Carrington; Robert H Singer
Journal:  Methods Enzymol       Date:  2003       Impact factor: 1.600

3.  Decapping and decay of messenger RNA occur in cytoplasmic processing bodies.

Authors:  Ujwal Sheth; Roy Parker
Journal:  Science       Date:  2003-05-02       Impact factor: 47.728

4.  Three-dimensional tracking of fluorescent nanoparticles with subnanometer precision by use of off-focus imaging.

Authors:  Michael Speidel; Alexandr Jonás; Ernst-Ludwig Florin
Journal:  Opt Lett       Date:  2003-01-15       Impact factor: 3.776

5.  Single mRNA molecules demonstrate probabilistic movement in living mammalian cells.

Authors:  Dahlene Fusco; Nathalie Accornero; Brigitte Lavoie; Shailesh M Shenoy; Jean-Marie Blanchard; Robert H Singer; Edouard Bertrand
Journal:  Curr Biol       Date:  2003-01-21       Impact factor: 10.834

Review 6.  Fluorescence in situ hybridization: past, present and future.

Authors:  Jeffrey M Levsky; Robert H Singer
Journal:  J Cell Sci       Date:  2003-07-15       Impact factor: 5.285

7.  Recovery, visualization, and analysis of actin and tubulin polymer flow in live cells: a fluorescent speckle microscopy study.

Authors:  P Vallotton; A Ponti; C M Waterman-Storer; E D Salmon; G Danuser
Journal:  Biophys J       Date:  2003-08       Impact factor: 4.033

Review 8.  Single-molecule visualization in cell biology.

Authors:  Yasushi Sako; Toshio Yanagida
Journal:  Nat Rev Mol Cell Biol       Date:  2003-09       Impact factor: 94.444

9.  Intranuclear binding kinetics and mobility of single native U1 snRNP particles in living cells.

Authors:  David Grünwald; Beatrice Spottke; Volker Buschmann; Ulrich Kubitscheck
Journal:  Mol Biol Cell       Date:  2006-09-20       Impact factor: 4.138

Review 10.  Stress granules: sites of mRNA triage that regulate mRNA stability and translatability.

Authors:  N Kedersha; P Anderson
Journal:  Biochem Soc Trans       Date:  2002-11       Impact factor: 5.407

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  12 in total

1.  Structural and functional analysis of the interaction between the nucleoporin Nup98 and the mRNA export factor Rae1.

Authors:  Yi Ren; Hyuk-Soo Seo; Günter Blobel; André Hoelz
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-24       Impact factor: 11.205

2.  Probes for intracellular RNA imaging in live cells.

Authors:  Philip J Santangelo; Eric Alonas; Jeenah Jung; Aaron W Lifland; Chiara Zurla
Journal:  Methods Enzymol       Date:  2012       Impact factor: 1.600

3.  Non-genetic heterogeneity from stochastic partitioning at cell division.

Authors:  Dann Huh; Johan Paulsson
Journal:  Nat Genet       Date:  2010-12-26       Impact factor: 38.330

Review 4.  mRNA on the move: the road to its biological destiny.

Authors:  Carolina Eliscovich; Adina R Buxbaum; Zachary B Katz; Robert H Singer
Journal:  J Biol Chem       Date:  2013-05-28       Impact factor: 5.157

5.  Not all quiet on the noise front.

Authors:  Emma McCullagh; Justin Farlow; Christopher Fuller; Juliet Girard; Joanna Lipinski-Kruszka; Dan Lu; Thomas Noriega; Geoffrey Rollins; Russell Spitzer; Michael Todhunter; Hana El-Samad
Journal:  Nat Chem Biol       Date:  2009-10       Impact factor: 15.040

6.  A novel role of vimentin filaments: binding and stabilization of collagen mRNAs.

Authors:  Azariyas A Challa; Branko Stefanovic
Journal:  Mol Cell Biol       Date:  2011-07-11       Impact factor: 4.272

7.  Single mRNA tracking in live cells.

Authors:  Hye Yoon Park; Adina R Buxbaum; Robert H Singer
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

Review 8.  Validating transcripts with probes and imaging technology.

Authors:  Shalev Itzkovitz; Alexander van Oudenaarden
Journal:  Nat Methods       Date:  2011-03-30       Impact factor: 28.547

9.  P-body loss is concomitant with formation of a messenger RNA storage domain in mouse oocytes.

Authors:  Matyas Flemr; Jun Ma; Richard M Schultz; Petr Svoboda
Journal:  Biol Reprod       Date:  2010-01-14       Impact factor: 4.285

10.  Characterizing mRNA interactions with RNA granules during translation initiation inhibition.

Authors:  Chiara Zurla; Aaron W Lifland; Philip J Santangelo
Journal:  PLoS One       Date:  2011-05-05       Impact factor: 3.240

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