Literature DB >> 16078005

Effect of spermine and DNase on DNA release from bacteriophage T5.

M de Frutos1, S Brasiles, P Tavares, E Raspaud.   

Abstract

Bacterial viruses (bacteriophages) consist of nucleic acid protected by a protein envelope called capsid. At the start of infection, the phage genome is translocated into the bacterial cytoplasm. In vitro (and also in vivo), this DNA release can be triggered by binding a specific receptor protein to the phage tail. The force responsible for the release arises from energy stored in the capsid due to strong confinement of the DNA. We show that this force can be modified by adding molecules like spermine that affect DNA conformation. The tetravalent cation spermine can reduce the pressure inside the capsid and induce condensation of the released DNA. We examine the effect of spermine on DNA ejection from phage T5 by using light scattering and gel electrophoresis to measure the amount of DNA remaining in the capsid at the end of ejection. We discuss the results in terms of free energy minimization and we demonstrate that the presence of a DNA condensate outside the phage generates an additional force pulling passively on the DNA remaining inside the capsid.

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Year:  2005        PMID: 16078005     DOI: 10.1140/epje/i2005-10019-5

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  26 in total

1.  Polymer Translocation through a Pore in a Membrane.

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Journal:  Phys Rev Lett       Date:  1996-07-22       Impact factor: 9.161

2.  DNA packaging and ejection forces in bacteriophage.

Authors:  J Kindt; S Tzlil; A Ben-Shaul; W M Gelbart
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-13       Impact factor: 11.205

3.  Osmotic pressure inhibition of DNA ejection from phage.

Authors:  Alex Evilevitch; Laurence Lavelle; Charles M Knobler; Eric Raspaud; William M Gelbart
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-24       Impact factor: 11.205

4.  Dynamics of molecular motors and polymer translocation with sequence heterogeneity.

Authors:  Yariv Kafri; David K Lubensky; David R Nelson
Journal:  Biophys J       Date:  2004-06       Impact factor: 4.033

5.  DNA ejection from bacteriophage T5: analysis of the kinetics and energetics.

Authors:  Marta de Frutos; Lucienne Letellier; Eric Raspaud
Journal:  Biophys J       Date:  2004-11-12       Impact factor: 4.033

6.  Condensation of DNA by trivalent cations. 1. Effects of DNA length and topology on the size and shape of condensed particles.

Authors:  P G Arscott; A Z Li; V A Bloomfield
Journal:  Biopolymers       Date:  1990       Impact factor: 2.505

7.  The structure of isometric capsids of bacteriophage T4.

Authors:  N H Olson; M Gingery; F A Eiserling; T S Baker
Journal:  Virology       Date:  2001-01-20       Impact factor: 3.616

8.  Precipitation of DNA by polyamines: a polyelectrolyte behavior.

Authors:  E Raspaud; M Olvera de la Cruz; J L Sikorav; F Livolant
Journal:  Biophys J       Date:  1998-01       Impact factor: 4.033

9.  Purification and structural and functional characterization of FhuA, a transporter of the Escherichia coli outer membrane.

Authors:  P Boulanger; M le Maire; M Bonhivers; S Dubois; M Desmadril; L Letellier
Journal:  Biochemistry       Date:  1996-11-12       Impact factor: 3.162

10.  Polymer- and salt-induced toroids of hexagonal DNA.

Authors:  J Ubbink; T Odijk
Journal:  Biophys J       Date:  1995-01       Impact factor: 4.033

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  13 in total

1.  Is the in vitro ejection of bacteriophage DNA quasistatic? A bulk to single virus study.

Authors:  N Chiaruttini; M de Frutos; E Augarde; P Boulanger; L Letellier; V Viasnoff
Journal:  Biophys J       Date:  2010-07-21       Impact factor: 4.033

Review 2.  Biological consequences of tightly bent DNA: the other life of a macromolecular celebrity.

Authors:  Hernan G Garcia; Paul Grayson; Lin Han; Mandar Inamdar; Jané Kondev; Philip C Nelson; Rob Phillips; Jonathan Widom; Paul A Wiggins
Journal:  Biopolymers       Date:  2007-02-05       Impact factor: 2.505

3.  Effects of salt concentrations and bending energy on the extent of ejection of phage genomes.

Authors:  Alex Evilevitch; Li Tai Fang; Aron M Yoffe; Martin Castelnovo; Donald C Rau; V Adrian Parsegian; William M Gelbart; Charles M Knobler
Journal:  Biophys J       Date:  2007-09-21       Impact factor: 4.033

4.  The effect of genome length on ejection forces in bacteriophage lambda.

Authors:  Paul Grayson; Alex Evilevitch; Mandar M Inamdar; Prashant K Purohit; William M Gelbart; Charles M Knobler; Rob Phillips
Journal:  Virology       Date:  2006-02-15       Impact factor: 3.616

5.  DNA ejection from bacteriophage: towards a general behavior for osmotic-suppression experiments.

Authors:  M Castelnovo; A Evilevitch
Journal:  Eur Phys J E Soft Matter       Date:  2007-08-31       Impact factor: 1.890

6.  Local structure of DNA toroids reveals curvature-dependent intermolecular forces.

Authors:  Luca Barberi; Françoise Livolant; Amélie Leforestier; Martin Lenz
Journal:  Nucleic Acids Res       Date:  2021-04-19       Impact factor: 16.971

7.  Repulsive DNA-DNA interactions accelerate viral DNA packaging in phage Phi29.

Authors:  Nicholas Keller; Damian delToro; Shelley Grimes; Paul J Jardine; Douglas E Smith
Journal:  Phys Rev Lett       Date:  2014-06-17       Impact factor: 9.161

8.  DNA ejection from an archaeal virus--a single-molecule approach.

Authors:  K J Hanhijärvi; G Ziedaite; M K Pietilä; E Hæggström; D H Bamford
Journal:  Biophys J       Date:  2013-05-21       Impact factor: 4.033

Review 9.  Viral capsids: mechanical characteristics, genome packaging and delivery mechanisms.

Authors:  W H Roos; I L Ivanovska; A Evilevitch; G J L Wuite
Journal:  Cell Mol Life Sci       Date:  2007-06       Impact factor: 9.261

10.  Capsid structure and its stability at the late stages of bacteriophage SPP1 assembly.

Authors:  Helen E White; Michael B Sherman; Sandrine Brasilès; Eric Jacquet; Philippa Seavers; Paulo Tavares; Elena V Orlova
Journal:  J Virol       Date:  2012-04-18       Impact factor: 5.103

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