Literature DB >> 16469346

The effect of genome length on ejection forces in bacteriophage lambda.

Paul Grayson1, Alex Evilevitch, Mandar M Inamdar, Prashant K Purohit, William M Gelbart, Charles M Knobler, Rob Phillips.   

Abstract

A variety of viruses tightly pack their genetic material into protein capsids that are barely large enough to enclose the genome. In particular, in bacteriophages, forces as high as 60 pN are encountered during packaging and ejection, produced by DNA bending elasticity and self-interactions. The high forces are believed to be important for the ejection process, though the extent of their involvement is not yet clear. As a result, there is a need for quantitative models and experiments that reveal the nature of the forces relevant to DNA ejection. Here, we report measurements of the ejection forces for two different mutants of bacteriophage lambda, lambdab221cI26 and lambdacI60, which differ in genome length by approximately 30%. As expected for a force-driven ejection mechanism, the osmotic pressure at which DNA release is completely inhibited varies with the genome length: we find inhibition pressures of 15 atm and 25 atm, for the short and long genomes, respectively, values that are in agreement with our theoretical calculations.

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Year:  2006        PMID: 16469346      PMCID: PMC3178461          DOI: 10.1016/j.virol.2006.01.003

Source DB:  PubMed          Journal:  Virology        ISSN: 0042-6822            Impact factor:   3.616


  42 in total

1.  Osmotic pressure inhibition of DNA ejection from phage.

Authors:  Alex Evilevitch; Laurence Lavelle; Charles M Knobler; Eric Raspaud; William M Gelbart
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-24       Impact factor: 11.205

2.  DNA ejection from bacteriophage T5: analysis of the kinetics and energetics.

Authors:  Marta de Frutos; Lucienne Letellier; Eric Raspaud
Journal:  Biophys J       Date:  2004-11-12       Impact factor: 4.033

Review 3.  Fifty-three years since Hershey and Chase; much ado about pressure but which pressure is it?

Authors:  Ian J Molineux
Journal:  Virology       Date:  2006-01-05       Impact factor: 3.616

4.  Encapsidated conformation of bacteriophage T7 DNA.

Authors:  M E Cerritelli; N Cheng; A H Rosenberg; C E McPherson; F P Booy; A C Steven
Journal:  Cell       Date:  1997-10-17       Impact factor: 41.582

Review 5.  Flexibility of DNA.

Authors:  P J Hagerman
Journal:  Annu Rev Biophys Biophys Chem       Date:  1988

6.  DNA arrangement in isometric phage heads.

Authors:  W C Earnshaw; S C Harrison
Journal:  Nature       Date:  1977-08-18       Impact factor: 49.962

7.  Measurement of the repulsive force between polyelectrolyte molecules in ionic solution: hydration forces between parallel DNA double helices.

Authors:  D C Rau; B Lee; V A Parsegian
Journal:  Proc Natl Acad Sci U S A       Date:  1984-05       Impact factor: 11.205

8.  Effect of spermine and DNase on DNA release from bacteriophage T5.

Authors:  M de Frutos; S Brasiles; P Tavares; E Raspaud
Journal:  Eur Phys J E Soft Matter       Date:  2005-08-03       Impact factor: 1.890

9.  E. coli K-12 pel mutants, which block phage lambda DNA injection, coincide with ptsM, which determines a component of a sugar transport system.

Authors:  J Elliott; W Arber
Journal:  Mol Gen Genet       Date:  1978-04-25

10.  Bacteriophage T7 DNA ejection into cells is initiated by an enzyme-like mechanism.

Authors:  Priscilla Kemp; Manisha Gupta; Ian J Molineux
Journal:  Mol Microbiol       Date:  2004-08       Impact factor: 3.501

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  49 in total

1.  A coarse-grain three-site-per-nucleotide model for DNA with explicit ions.

Authors:  Gordon S Freeman; Daniel M Hinckley; Juan J de Pablo
Journal:  J Chem Phys       Date:  2011-10-28       Impact factor: 3.488

2.  Ion-dependent dynamics of DNA ejections for bacteriophage lambda.

Authors:  David Wu; David Van Valen; Qicong Hu; Rob Phillips
Journal:  Biophys J       Date:  2010-08-09       Impact factor: 4.033

3.  A single-molecule Hershey-Chase experiment.

Authors:  David Van Valen; David Wu; Yi-Ju Chen; Hannah Tuson; Paul Wiggins; Rob Phillips
Journal:  Curr Biol       Date:  2012-06-21       Impact factor: 10.834

4.  Mechanisms of capsid assembly around a polymer.

Authors:  Aleksandr Kivenson; Michael F Hagan
Journal:  Biophys J       Date:  2010-07-21       Impact factor: 4.033

5.  Role of DNA-DNA interactions on the structure and thermodynamics of bacteriophages Lambda and P4.

Authors:  Anton S Petrov; Stephen C Harvey
Journal:  J Struct Biol       Date:  2010-11-11       Impact factor: 2.867

6.  Differential assembly of Hepatitis B Virus core protein on single- and double-stranded nucleic acid suggest the dsDNA-filled core is spring-loaded.

Authors:  Mary S Dhason; Joseph C-Y Wang; Michael F Hagan; Adam Zlotnick
Journal:  Virology       Date:  2012-05-16       Impact factor: 3.616

7.  Dynamics of DNA ejection from bacteriophage.

Authors:  Mandar M Inamdar; William M Gelbart; Rob Phillips
Journal:  Biophys J       Date:  2006-05-05       Impact factor: 4.033

Review 8.  Biological consequences of tightly bent DNA: the other life of a macromolecular celebrity.

Authors:  Hernan G Garcia; Paul Grayson; Lin Han; Mandar Inamdar; Jané Kondev; Philip C Nelson; Rob Phillips; Jonathan Widom; Paul A Wiggins
Journal:  Biopolymers       Date:  2007-02-05       Impact factor: 2.505

9.  Uncoating the herpes simplex virus genome.

Authors:  William W Newcomb; Frank P Booy; Jay C Brown
Journal:  J Mol Biol       Date:  2007-05-13       Impact factor: 5.469

10.  Visualization of bacteriophage T3 capsids with DNA incompletely packaged in vivo.

Authors:  Ping-An Fang; Elena T Wright; Susan T Weintraub; Kevin Hakala; Weimin Wu; Philip Serwer; Wen Jiang
Journal:  J Mol Biol       Date:  2008-10-14       Impact factor: 5.469

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