Literature DB >> 15542548

DNA ejection from bacteriophage T5: analysis of the kinetics and energetics.

Marta de Frutos1, Lucienne Letellier, Eric Raspaud.   

Abstract

DNA ejection from bacteriophage T5 can be passively driven in vitro by the interaction with its specific host receptor. Light scattering was used to determine the physical parameters associated with this process. By studying the ejection kinetics at different temperatures, we demonstrate that an activation energy of the order of 70 k(B)T must be overcome to allow the complete DNA ejection. A complex shape of the kinetics was found whatever the temperature. This shape may be actually understood using a phenomenological model based on a multistep process. Passing from one stage to another requires the mentioned thermal activation of pressurized DNA inside the capsids. Both effects contribute to shorten or to lengthen the pause time between the different stages explaining why the T5 DNA ejection is so slow compared to other types of phage.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15542548      PMCID: PMC1305138          DOI: 10.1529/biophysj.104.048785

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  20 in total

Review 1.  Molecular basis of mechanotransduction in living cells.

Authors:  O P Hamill; B Martinac
Journal:  Physiol Rev       Date:  2001-04       Impact factor: 37.312

2.  DNA packaging and ejection forces in bacteriophage.

Authors:  J Kindt; S Tzlil; A Ben-Shaul; W M Gelbart
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-13       Impact factor: 11.205

3.  Osmotic pressure inhibition of DNA ejection from phage.

Authors:  Alex Evilevitch; Laurence Lavelle; Charles M Knobler; Eric Raspaud; William M Gelbart
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-24       Impact factor: 11.205

4.  Real-time imaging of DNA ejection from single phage particles.

Authors:  Stéphanie Mangenot; Marion Hochrein; Joachim Rädler; Lucienne Letellier
Journal:  Curr Biol       Date:  2005-03-08       Impact factor: 10.834

5.  Evidence for heterogeneity in populations of T5 bacteriophage.

Authors:  B Labedan; J Legault-Demare
Journal:  J Virol       Date:  1974-05       Impact factor: 5.103

Review 6.  First-step-transfer deoxyribonucleic acid of bacteriophage T5.

Authors:  Y T Lanni
Journal:  Bacteriol Rev       Date:  1968-09

7.  Putrescine and certain polyamines can inhibit DNA injection from bacteriophage lambda.

Authors:  D P Harrison; V C Bode
Journal:  J Mol Biol       Date:  1975-08-15       Impact factor: 5.469

8.  A very early step in the T5 DNA injection process.

Authors:  B Labedan
Journal:  Virology       Date:  1976-12       Impact factor: 3.616

9.  Packaging of DNA in bacteriophage heads: some considerations on energetics.

Authors:  S C Riemer; V A Bloomfield
Journal:  Biopolymers       Date:  1978-03       Impact factor: 2.505

10.  Localization of single-chain interruptions in bacteriophage T5 DNA I. Electron microscopic studies.

Authors:  P P Scheible; E A Rhoades; M Rhoades
Journal:  J Virol       Date:  1977-09       Impact factor: 5.103

View more
  24 in total

1.  Is the in vitro ejection of bacteriophage DNA quasistatic? A bulk to single virus study.

Authors:  N Chiaruttini; M de Frutos; E Augarde; P Boulanger; L Letellier; V Viasnoff
Journal:  Biophys J       Date:  2010-07-21       Impact factor: 4.033

2.  Biophysics of T5, IRA phages, Escherichia coli outer membrane protein FhuA and T5-FhuA interaction.

Authors:  T Mdzinarashvili; M Khvedelidze; A Ivanova; G Mrevlishvili; M Kutateladze; N Balarjishvili; H Celia; F Pattus
Journal:  Eur Biophys J       Date:  2005-12-09       Impact factor: 1.733

Review 3.  Biological consequences of tightly bent DNA: the other life of a macromolecular celebrity.

Authors:  Hernan G Garcia; Paul Grayson; Lin Han; Mandar Inamdar; Jané Kondev; Philip C Nelson; Rob Phillips; Jonathan Widom; Paul A Wiggins
Journal:  Biopolymers       Date:  2007-02-05       Impact factor: 2.505

4.  A kinetic analysis of DNA ejection from tailed phages revealing the prerequisite activation energy.

Authors:  Eric Raspaud; Thomas Forth; Carlos São-José; Paulo Tavares; Marta de Frutos
Journal:  Biophys J       Date:  2007-08-03       Impact factor: 4.033

5.  Uncoating the herpes simplex virus genome.

Authors:  William W Newcomb; Frank P Booy; Jay C Brown
Journal:  J Mol Biol       Date:  2007-05-13       Impact factor: 5.469

6.  The effect of genome length on ejection forces in bacteriophage lambda.

Authors:  Paul Grayson; Alex Evilevitch; Mandar M Inamdar; Prashant K Purohit; William M Gelbart; Charles M Knobler; Rob Phillips
Journal:  Virology       Date:  2006-02-15       Impact factor: 3.616

7.  Ejection dynamics of polymeric chains from viral capsids: effect of solvent quality.

Authors:  I Ali; D Marenduzzo; J M Yeomans
Journal:  Biophys J       Date:  2008-01-11       Impact factor: 4.033

Review 8.  Is phage DNA 'injected' into cells--biologists and physicists can agree.

Authors:  Paul Grayson; Ian J Molineux
Journal:  Curr Opin Microbiol       Date:  2007-08-21       Impact factor: 7.934

9.  DNA ejection from bacteriophage: towards a general behavior for osmotic-suppression experiments.

Authors:  M Castelnovo; A Evilevitch
Journal:  Eur Phys J E Soft Matter       Date:  2007-08-31       Impact factor: 1.890

10.  Effect of spermine and DNase on DNA release from bacteriophage T5.

Authors:  M de Frutos; S Brasiles; P Tavares; E Raspaud
Journal:  Eur Phys J E Soft Matter       Date:  2005-08-03       Impact factor: 1.890

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.