Literature DB >> 22514336

Capsid structure and its stability at the late stages of bacteriophage SPP1 assembly.

Helen E White1, Michael B Sherman, Sandrine Brasilès, Eric Jacquet, Philippa Seavers, Paulo Tavares, Elena V Orlova.   

Abstract

The structure of the bacteriophage SPP1 capsid was determined at subnanometer resolution by cryo-electron microscopy and single-particle analysis. The icosahedral capsid is composed of the major capsid protein gp13 and the auxiliary protein gp12, which are organized in a T=7 lattice. DNA is arranged in layers with a distance of ~24.5 Å. gp12 forms spikes that are anchored at the center of gp13 hexamers. In a gp12-deficient mutant, the centers of hexamers are closed by loops of gp13 coming together to protect the SPP1 genome from the outside environment. The HK97-like fold was used to build a pseudoatomic model of gp13. Its structural organization remains unchanged upon tail binding and following DNA release. gp13 exhibits enhanced thermostability in the DNA-filled capsid. A remarkable convergence between the thermostability of the capsid and those of the other virion components was found, revealing that the overall architecture of the SPP1 infectious particle coevolved toward high robustness.

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Year:  2012        PMID: 22514336      PMCID: PMC3393595          DOI: 10.1128/JVI.00412-12

Source DB:  PubMed          Journal:  J Virol        ISSN: 0022-538X            Impact factor:   5.103


  54 in total

1.  In vitro packaging of DNA of the Bacillus subtilis bacteriophage SPP1.

Authors:  A Dröge; P Tavares
Journal:  J Mol Biol       Date:  2000-02-11       Impact factor: 5.469

2.  Topologically linked protein rings in the bacteriophage HK97 capsid.

Authors:  W R Wikoff; L Liljas; R L Duda; H Tsuruta; R W Hendrix; J E Johnson
Journal:  Science       Date:  2000-09-22       Impact factor: 47.728

3.  The portal protein plays essential roles at different steps of the SPP1 DNA packaging process.

Authors:  Anabela Isidro; Adriano O Henriques; Paulo Tavares
Journal:  Virology       Date:  2004-05-01       Impact factor: 3.616

4.  The structure of an infectious P22 virion shows the signal for headful DNA packaging.

Authors:  Gabriel C Lander; Liang Tang; Sherwood R Casjens; Eddie B Gilcrease; Peter Prevelige; Anton Poliakov; Clinton S Potter; Bridget Carragher; John E Johnson
Journal:  Science       Date:  2006-05-18       Impact factor: 47.728

5.  Thermofluor-based high-throughput stability optimization of proteins for structural studies.

Authors:  Ulrika B Ericsson; B Martin Hallberg; George T Detitta; Niek Dekker; Pär Nordlund
Journal:  Anal Biochem       Date:  2006-08-10       Impact factor: 3.365

6.  Structure of bacteriophage SPP1 head-to-tail connection reveals mechanism for viral DNA gating.

Authors:  Sophie Lhuillier; Matthieu Gallopin; Bernard Gilquin; Sandrine Brasilès; Nathalie Lancelot; Guillaume Letellier; Mathilde Gilles; Guillaume Dethan; Elena V Orlova; Joël Couprie; Paulo Tavares; Sophie Zinn-Justin
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-11       Impact factor: 11.205

Review 7.  A new generation of the IMAGIC image processing system.

Authors:  M van Heel; G Harauz; E V Orlova; R Schmidt; M Schatz
Journal:  J Struct Biol       Date:  1996 Jan-Feb       Impact factor: 2.867

Review 8.  What does structure tell us about virus evolution?

Authors:  Dennis H Bamford; Jonathan M Grimes; David I Stuart
Journal:  Curr Opin Struct Biol       Date:  2005-11-03       Impact factor: 6.809

9.  The bacteriophage straight phi29 portal motor can package DNA against a large internal force.

Authors:  D E Smith; S J Tans; S B Smith; S Grimes; D L Anderson; C Bustamante
Journal:  Nature       Date:  2001-10-18       Impact factor: 49.962

10.  Effect of spermine and DNase on DNA release from bacteriophage T5.

Authors:  M de Frutos; S Brasiles; P Tavares; E Raspaud
Journal:  Eur Phys J E Soft Matter       Date:  2005-08-03       Impact factor: 1.890

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  28 in total

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Authors:  Cecilia Bebeacua; Denise Tremblay; Carine Farenc; Marie-Pierre Chapot-Chartier; Irina Sadovskaya; Marin van Heel; David Veesler; Sylvain Moineau; Christian Cambillau
Journal:  J Virol       Date:  2013-09-11       Impact factor: 5.103

2.  Insights into head-tailed viruses infecting extremely halophilic archaea.

Authors:  Maija K Pietilä; Pasi Laurinmäki; Daniel A Russell; Ching-Chung Ko; Deborah Jacobs-Sera; Sarah J Butcher; Dennis H Bamford; Roger W Hendrix
Journal:  J Virol       Date:  2013-01-02       Impact factor: 5.103

3.  The collagen-like protein gp12 is a temperature-dependent reversible binder of SPP1 viral capsids.

Authors:  Mohamed Zairi; Asita C Stiege; Naima Nhiri; Eric Jacquet; Paulo Tavares
Journal:  J Biol Chem       Date:  2014-07-29       Impact factor: 5.157

4.  A virus capsid-like nanocompartment that stores iron and protects bacteria from oxidative stress.

Authors:  Colleen A McHugh; Juan Fontana; Daniel Nemecek; Naiqian Cheng; Anastasia A Aksyuk; J Bernard Heymann; Dennis C Winkler; Alan S Lam; Joseph S Wall; Alasdair C Steven; Egbert Hoiczyk
Journal:  EMBO J       Date:  2014-07-14       Impact factor: 11.598

Review 5.  Molecular architecture of tailed double-stranded DNA phages.

Authors:  Andrei Fokine; Michael G Rossmann
Journal:  Bacteriophage       Date:  2014-02-21

6.  Exploring the Balance between DNA Pressure and Capsid Stability in Herpesviruses and Phages.

Authors:  D W Bauer; D Li; J Huffman; F L Homa; K Wilson; J C Leavitt; S R Casjens; J Baines; A Evilevitch
Journal:  J Virol       Date:  2015-07-01       Impact factor: 5.103

Review 7.  Nature's favorite building block: Deciphering folding and capsid assembly of proteins with the HK97-fold.

Authors:  Margaret M Suhanovsky; Carolyn M Teschke
Journal:  Virology       Date:  2015-04-08       Impact factor: 3.616

Review 8.  Mechanisms of DNA Packaging by Large Double-Stranded DNA Viruses.

Authors:  Venigalla B Rao; Michael Feiss
Journal:  Annu Rev Virol       Date:  2015-09-10       Impact factor: 10.431

9.  The first structure of a mycobacteriophage, the Mycobacterium abscessus subsp. bolletii phage Araucaria.

Authors:  Mohamed Sassi; Cecilia Bebeacua; Michel Drancourt; Christian Cambillau
Journal:  J Virol       Date:  2013-05-15       Impact factor: 5.103

10.  Cryo-electron microscopy structure of lactococcal siphophage 1358 virion.

Authors:  Silvia Spinelli; Cecilia Bebeacua; Igor Orlov; Denise Tremblay; Bruno P Klaholz; Sylvain Moineau; Christian Cambillau
Journal:  J Virol       Date:  2014-05-28       Impact factor: 5.103

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