Literature DB >> 11707588

DNA packaging and ejection forces in bacteriophage.

J Kindt1, S Tzlil, A Ben-Shaul, W M Gelbart.   

Abstract

We calculate the forces required to package (or, equivalently, acting to eject) DNA into (from) a bacteriophage capsid, as a function of the loaded (ejected) length, under conditions for which the DNA is either self-repelling or self-attracting. Through computer simulation and analytical theory, we find the loading force to increase more than 10-fold (to tens of piconewtons) during the final third of the loading process; correspondingly, the internal pressure drops 10-fold to a few atmospheres (matching the osmotic pressure in the cell) upon ejection of just a small fraction of the phage genome. We also determine an evolution of the arrangement of packaged DNA from toroidal to spool-like structures.

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Year:  2001        PMID: 11707588      PMCID: PMC61099          DOI: 10.1073/pnas.241486298

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  21 in total

1.  Topologically linked protein rings in the bacteriophage HK97 capsid.

Authors:  W R Wikoff; L Liljas; R L Duda; H Tsuruta; R W Hendrix; J E Johnson
Journal:  Science       Date:  2000-09-22       Impact factor: 47.728

2.  Condensation of DNA by trivalent cations. 1. Effects of DNA length and topology on the size and shape of condensed particles.

Authors:  P G Arscott; A Z Li; V A Bloomfield
Journal:  Biopolymers       Date:  1990       Impact factor: 2.505

3.  X-ray diffraction studies of bacterial viruses.

Authors:  A C NORTH; A RICH
Journal:  Nature       Date:  1961-09-23       Impact factor: 49.962

4.  DNA arrangement in isometric phage heads.

Authors:  W C Earnshaw; S C Harrison
Journal:  Nature       Date:  1977-08-18       Impact factor: 49.962

5.  Packaging of DNA in bacteriophage heads: some considerations on energetics.

Authors:  S C Riemer; V A Bloomfield
Journal:  Biopolymers       Date:  1978-03       Impact factor: 2.505

6.  The bacteriophage straight phi29 portal motor can package DNA against a large internal force.

Authors:  D E Smith; S J Tans; S B Smith; S Grimes; D L Anderson; C Bustamante
Journal:  Nature       Date:  2001-10-18       Impact factor: 49.962

7.  Ion etching bacteriophage T4: support for a spiral-fold model of packaged DNA.

Authors:  L W Black; W W Newcomb; J W Boring; J C Brown
Journal:  Proc Natl Acad Sci U S A       Date:  1985-12       Impact factor: 11.205

8.  Mutants of Escherichia coli that do not contain 1,4-diaminobutane (putrescine) or spermidine.

Authors:  E W Hafner; C W Tabor; H Tabor
Journal:  J Biol Chem       Date:  1979-12-25       Impact factor: 5.157

9.  Tests of spool models for DNA packaging in phage lambda.

Authors:  J Widom; R L Baldwin
Journal:  J Mol Biol       Date:  1983-12-25       Impact factor: 5.469

10.  Organization of double-stranded DNA in bacteriophages: a study by cryo-electron microscopy of vitrified samples.

Authors:  J Lepault; J Dubochet; W Baschong; E Kellenberger
Journal:  EMBO J       Date:  1987-05       Impact factor: 11.598

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  103 in total

1.  Mechanics of DNA packaging in viruses.

Authors:  Prashant K Purohit; Jané Kondev; Rob Phillips
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-10       Impact factor: 11.205

2.  Forces and pressures in DNA packaging and release from viral capsids.

Authors:  Shelly Tzlil; James T Kindt; William M Gelbart; Avinoam Ben-Shaul
Journal:  Biophys J       Date:  2003-03       Impact factor: 4.033

3.  Investigation of bacteriophage T4 by atomic force microscopy.

Authors:  Yuri G Kuznetsov; Sheng-Chieh Chang; Alexander McPherson
Journal:  Bacteriophage       Date:  2011-05-01

4.  An alternative method to the osmotic stressing polymers: the osmomanometer.

Authors:  Eric Raspaud
Journal:  Eur Biophys J       Date:  2003-05-10       Impact factor: 1.733

5.  Osmotic shock and the strength of viral capsids.

Authors:  Amado Cordova; Markus Deserno; William M Gelbart; Avinoam Ben-Shaul
Journal:  Biophys J       Date:  2003-07       Impact factor: 4.033

6.  Osmotic pressure inhibition of DNA ejection from phage.

Authors:  Alex Evilevitch; Laurence Lavelle; Charles M Knobler; Eric Raspaud; William M Gelbart
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-24       Impact factor: 11.205

7.  Bacteriophage capsids: tough nanoshells with complex elastic properties.

Authors:  I L Ivanovska; P J de Pablo; B Ibarra; G Sgalari; F C MacKintosh; J L Carrascosa; C F Schmidt; G J L Wuite
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-07       Impact factor: 11.205

8.  DNA ejection from bacteriophage T5: analysis of the kinetics and energetics.

Authors:  Marta de Frutos; Lucienne Letellier; Eric Raspaud
Journal:  Biophys J       Date:  2004-11-12       Impact factor: 4.033

9.  Ion-dependent dynamics of DNA ejections for bacteriophage lambda.

Authors:  David Wu; David Van Valen; Qicong Hu; Rob Phillips
Journal:  Biophys J       Date:  2010-08-09       Impact factor: 4.033

10.  Effect of spermine and DNase on DNA release from bacteriophage T5.

Authors:  M de Frutos; S Brasiles; P Tavares; E Raspaud
Journal:  Eur Phys J E Soft Matter       Date:  2005-08-03       Impact factor: 1.890

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