Literature DB >> 15875208

Species identification by means of pyrosequencing the mitochondrial 12S rRNA gene.

B Balitzki-Korte1, K Anslinger, C Bartsch, B Rolf.   

Abstract

The aim of this study was to develop a new method for species identification based on the analysis of a very short nucleotide sequence. For this reason, the mitochondrial 12S rRNA gene, together with the new method of pyrosequencing, was used. The detection of only 20 nucleotides, following the sequencing primer within a 149-bp fragment by pyrosequencing, was sufficient to identify the biological origin of the samples by alignment with a reference sequence database. A case example with a piece of skin is presented, and the question whether this piece of skin came from a missing wife or from an animal could be answered.

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Year:  2005        PMID: 15875208     DOI: 10.1007/s00414-005-0537-9

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  14 in total

1.  Identification of the skeletal remains of Martin Bormann by mtDNA analysis.

Authors:  K Anslinger; G Weichhold; W Keil; B Bayer; W Eisenmenger
Journal:  Int J Legal Med       Date:  2001       Impact factor: 2.686

2.  Species identification by means of the cytochrome b gene.

Authors:  W Parson; K Pegoraro; H Niederstätter; M Föger; M Steinlechner
Journal:  Int J Legal Med       Date:  2000       Impact factor: 2.686

3.  Systematic relationships among Lutzomyia sand flies (Diptera: Psychodidae) of Peru and Colombia based on the analysis of 12S and 28S ribosomal DNA sequences.

Authors:  Lorenza Beati; Abraham G Cáceres; Jamie A Lee; Leonard E Munstermann
Journal:  Int J Parasitol       Date:  2004-02       Impact factor: 3.981

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Journal:  Genome Res       Date:  1996-05       Impact factor: 9.043

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Authors:  A R Forrest; P R Carnegie
Journal:  Biotechniques       Date:  1994-07       Impact factor: 1.993

Review 7.  Structure of ribosomal RNA.

Authors:  H F Noller
Journal:  Annu Rev Biochem       Date:  1984       Impact factor: 23.643

8.  Sequence and organization of the human mitochondrial genome.

Authors:  S Anderson; A T Bankier; B G Barrell; M H de Bruijn; A R Coulson; J Drouin; I C Eperon; D P Nierlich; B A Roe; F Sanger; P H Schreier; A J Smith; R Staden; I G Young
Journal:  Nature       Date:  1981-04-09       Impact factor: 49.962

9.  Reconstructing an island radiation using ancient and recent DNA: the extinct and living day geckos (Phelsuma) of the Mascarene islands.

Authors:  J J Austin; E N Arnold; C G Jones
Journal:  Mol Phylogenet Evol       Date:  2004-04       Impact factor: 4.286

10.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

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  18 in total

Review 1.  DNA typing in wildlife crime: recent developments in species identification.

Authors:  Shanan S Tobe; Adrian Linacre
Journal:  Forensic Sci Med Pathol       Date:  2010-06-05       Impact factor: 2.007

2.  Quantification of mtDNA mixtures in forensic evidence material using pyrosequencing.

Authors:  H Andréasson; M Nilsson; B Budowle; S Frisk; M Allen
Journal:  Int J Legal Med       Date:  2006-02-02       Impact factor: 2.686

3.  Amelogenin sex determination by pyrosequencing of short PCR products.

Authors:  Frank Tschentscher; Ulrich H Frey; Thomas Bajanowski
Journal:  Int J Legal Med       Date:  2008-03-20       Impact factor: 2.686

4.  Forensic species identification based on size variation of mitochondrial DNA hypervariable regions.

Authors:  Hiroaki Nakamura; Tomonori Muro; Shinji Imamura; Isao Yuasa
Journal:  Int J Legal Med       Date:  2008-12-04       Impact factor: 2.686

5.  Bite through the tent.

Authors:  Jana Naue; Sabine Lutz-Bonengel; Klaus Pietsch; Timo Sänger; Nicola Schlauderer; Ulrike Schmidt
Journal:  Int J Legal Med       Date:  2012-02-24       Impact factor: 2.686

6.  Modular real-time PCR screening assay for common European animal families.

Authors:  J Naue; S Lutz-Bonengel; T Sänger; N Schlauderer; U Schmidt
Journal:  Int J Legal Med       Date:  2013-04-24       Impact factor: 2.686

7.  Forensic animal DNA analysis using economical two-step direct PCR.

Authors:  Thitika Kitpipit; Wilaiwan Chotigeat; Adrian Linacre; Phuvadol Thanakiatkrai
Journal:  Forensic Sci Med Pathol       Date:  2014-01-17       Impact factor: 2.007

8.  Sequence of specific mitochondrial 16S rRNA gene fragment from Egyptian buffalo is used as a pattern for discrimination between river buffaloes, cattle, sheep and goats.

Authors:  Hassan A I Ramadan
Journal:  Mol Biol Rep       Date:  2010-11-30       Impact factor: 2.316

9.  Development of species identification tests targeting the 16S ribosomal RNA coding region in mitochondrial DNA.

Authors:  Kazuhiko Imaizumi; Tomoko Akutsu; Sachio Miyasaka; Mineo Yoshino
Journal:  Int J Legal Med       Date:  2006-11-16       Impact factor: 2.686

10.  Species identification of protected carpet pythons suitable for degraded forensic samples.

Authors:  Sherryn Ciavaglia; Stephen Donnellan; Julianne Henry; Adrian Linacre
Journal:  Forensic Sci Med Pathol       Date:  2014-06-12       Impact factor: 2.007

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