Literature DB >> 16453148

Quantification of mtDNA mixtures in forensic evidence material using pyrosequencing.

H Andréasson1, M Nilsson, B Budowle, S Frisk, M Allen.   

Abstract

Analysis of mtDNA variation using Sanger sequencing does not allow accurate quantification of the components of mtDNA mixtures. An alternative method to determine the specific mixture ratios in samples displaying hetero-plasma, consisting of DNA contributions from several individuals, or containing contamination would therefore be valuable. A novel quantification system for mtDNA mixture analysis has been developed based on pyrosequencing technology, in which the linear relationship between incorporated nucleotides and released light allows quantification of the components of a sample. Within five polymerase chain reaction fragments, seven variable positions in the mtDNA control and coding region were evaluated using this quantification analysis. For all single nucleotide polymorphisms quantified in this study, a linear relationship was observed between the measured and expected mixture ratios. This mtDNA quantification assay is an easy to use, fast and accurate quantification system, with the ability to resolve and interpret major and minor mtDNA components in forensic mixture samples.

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Year:  2006        PMID: 16453148     DOI: 10.1007/s00414-005-0072-8

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  27 in total

1.  Mitochondrial DNA regions HVI and HVII population data.

Authors:  B Budowle; M R Wilson; J A DiZinno; C Stauffer; M A Fasano; M M Holland; K L Monson
Journal:  Forensic Sci Int       Date:  1999-07-12       Impact factor: 2.395

2.  Assessing allele frequencies of single nucleotide polymorphisms in DNA pools by pyrosequencing technology.

Authors:  Jon Wasson; Gary Skolnick; Latisha Love-Gregory; M Alan Permutt
Journal:  Biotechniques       Date:  2002-05       Impact factor: 1.993

3.  Evaluation of a potential epigenetic biomarker by quantitative methyl-single nucleotide polymorphism analysis.

Authors:  Karen Uhlmann; Anja Brinckmann; Mohammad R Toliat; Heide Ritter; Peter Nürnberg
Journal:  Electrophoresis       Date:  2002-12       Impact factor: 3.535

4.  Real-time DNA quantification of nuclear and mitochondrial DNA in forensic analysis.

Authors:  Hanna Andréasson; Ulf Gyllensten; Marie Allen
Journal:  Biotechniques       Date:  2002-08       Impact factor: 1.993

5.  Estimation of single nucleotide polymorphism allele frequency in DNA pools by using Pyrosequencing.

Authors:  Jonathan D Gruber; Peter B Colligan; Johanna K Wolford
Journal:  Hum Genet       Date:  2002-04-09       Impact factor: 4.132

6.  Quantification of allele-specific G-protein beta3 subunit mRNA transcripts in different human cells and tissues by Pyrosequencing.

Authors:  Aijun Sun; Junbo Ge; Winfried Siffert; Ulrich H Frey
Journal:  Eur J Hum Genet       Date:  2005-03       Impact factor: 4.246

7.  Characterization of mtDNA SNP typing and mixture ratio assessment with simultaneous real-time PCR quantification of both allelic states.

Authors:  Harald Niederstätter; Michael D Coble; Petra Grubwieser; Thomas J Parsons; Walther Parson
Journal:  Int J Legal Med       Date:  2005-08-09       Impact factor: 2.686

8.  A simple salting out procedure for extracting DNA from human nucleated cells.

Authors:  S A Miller; D D Dykes; H F Polesky
Journal:  Nucleic Acids Res       Date:  1988-02-11       Impact factor: 16.971

9.  Peak height variations in automated sequencing of PCR products using Taq dye-terminator chemistry.

Authors:  L T Parker; Q Deng; H Zakeri; C Carlson; D A Nickerson; P Y Kwok
Journal:  Biotechniques       Date:  1995-07       Impact factor: 1.993

10.  Forensic utility of mitochondrial DNA analysis based on denaturing high-performance liquid chromatography.

Authors:  Greggory S LaBerge; Robert J Shelton; Phillip B Danielson
Journal:  Croat Med J       Date:  2003-06       Impact factor: 1.351

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  12 in total

1.  Assessment of soil fungal communities using pyrosequencing.

Authors:  Young Woon Lim; Byung Kwon Kim; Changmu Kim; Hack Sung Jung; Bong-Soo Kim; Jae-Hak Lee; Jongsik Chun
Journal:  J Microbiol       Date:  2010-06-23       Impact factor: 3.422

2.  Amelogenin sex determination by pyrosequencing of short PCR products.

Authors:  Frank Tschentscher; Ulrich H Frey; Thomas Bajanowski
Journal:  Int J Legal Med       Date:  2008-03-20       Impact factor: 2.686

3.  Investigative strategy for the forensic detection of sperm traces.

Authors:  Heidrun Evers; Frank Heidorn; Christin Gruber; Gabriele Lasczkowski; Manfred Risse; Reinhard Dettmeyer; Marcel A Verhoff
Journal:  Forensic Sci Med Pathol       Date:  2009-06-11       Impact factor: 2.007

4.  Validation of the PLEX-ID™ mass spectrometry mitochondrial DNA assay.

Authors:  David H Warshauer; Jonathan King; Arthur J Eisenberg; Bruce Budowle
Journal:  Int J Legal Med       Date:  2012-07-21       Impact factor: 2.686

5.  A novel, 4-h DNA extraction method for STR typing of casework bone samples.

Authors:  Laila Hasap; Wilaiwan Chotigeat; Jintana Pradutkanchana; Uraporn Vongvatcharanon; Thitika Kitpipit; Phuvadol Thanakiatkrai
Journal:  Int J Legal Med       Date:  2020-01-02       Impact factor: 2.686

6.  Comparison of the effects of sterilisation techniques on subsequent DNA profiling.

Authors:  Kirsty Shaw; Ivana Sesardić; Nikki Bristol; Carole Ames; Kathryn Dagnall; Caryn Ellis; Fiona Whittaker; Barbara Daniel
Journal:  Int J Legal Med       Date:  2007-02-23       Impact factor: 2.686

7.  Factors affecting the detection and quantification of mitochondrial point heteroplasmy using Sanger sequencing and SNaPshot minisequencing.

Authors:  Jana Naue; Timo Sänger; Ulrike Schmidt; Rachel Klein; Sabine Lutz-Bonengel
Journal:  Int J Legal Med       Date:  2011-01-21       Impact factor: 2.686

8.  A simple method using PyrosequencingTM to identify de novo SNPs in pooled DNA samples.

Authors:  Yeong-Shin Lin; Fu-Guo Robert Liu; Tzi-Yuan Wang; Cheng-Tsung Pan; Wei-Ting Chang; Wen-Hsiung Li
Journal:  Nucleic Acids Res       Date:  2010-12-03       Impact factor: 16.971

9.  Analysis of mixtures using next generation sequencing of mitochondrial DNA hypervariable regions.

Authors:  Hanna Kim; Henry A Erlich; Cassandra D Calloway
Journal:  Croat Med J       Date:  2015-06       Impact factor: 1.351

10.  Mitochondrial DNA variants in obesity.

Authors:  Nadja Knoll; Ivonne Jarick; Anna-Lena Volckmar; Martin Klingenspor; Thomas Illig; Harald Grallert; Christian Gieger; Heinz-Erich Wichmann; Annette Peters; Susanna Wiegand; Heike Biebermann; Pamela Fischer-Posovszky; Martin Wabitsch; Henry Völzke; Matthias Nauck; Alexander Teumer; Dieter Rosskopf; Christian Rimmbach; Stefan Schreiber; Gunnar Jacobs; Wolfgang Lieb; Andre Franke; Johannes Hebebrand; Anke Hinney
Journal:  PLoS One       Date:  2014-05-02       Impact factor: 3.240

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