Literature DB >> 15840925

Beamline Scheduling Software: administration software for automatic operation of the RIKEN structural genomics beamlines at SPring-8.

Go Ueno1, Hiroyuki Kanda, Takashi Kumasaka, Masaki Yamamoto.   

Abstract

Beamline Scheduling Software (BSS) has been developed for the schedule management and equipment control of the RIKEN Structural Genomics Beamlines I and II (BL26B1 and BL26B2 at SPring-8). The beamline operation is automated with a sample-changer robot and a database system. The experimental schedule is registered to BSS as a list of diffraction measurements for numbers of protein crystals. BSS implements the beamline operation communicating with beamline instruments through the computer network. The RIKEN Structural Genomics Beamline I (BL26B1) opened for users using BSS in October 2002, and the automatic operation was implemented at BL26B2 in October 2003.

Mesh:

Year:  2005        PMID: 15840925     DOI: 10.1107/S0909049505004735

Source DB:  PubMed          Journal:  J Synchrotron Radiat        ISSN: 0909-0495            Impact factor:   2.616


  31 in total

1.  A structural mechanism for dimeric to tetrameric oligomer conversion in Halomonas sp. nucleoside diphosphate kinase.

Authors:  Shigeki Arai; Yasushi Yonezawa; Nobuo Okazaki; Fumiko Matsumoto; Taro Tamada; Hiroko Tokunaga; Matsujiro Ishibashi; Michael Blaber; Masao Tokunaga; Ryota Kuroki
Journal:  Protein Sci       Date:  2012-03-09       Impact factor: 6.725

2.  Structural basis for a [4Fe-3S] cluster in the oxygen-tolerant membrane-bound [NiFe]-hydrogenase.

Authors:  Yasuhito Shomura; Ki-Seok Yoon; Hirofumi Nishihara; Yoshiki Higuchi
Journal:  Nature       Date:  2011-10-16       Impact factor: 49.962

3.  RIKEN structural genomics beamlines at the SPring-8; high throughput protein crystallography with automated beamline operation.

Authors:  Go Ueno; Hiroyuki Kanda; Raita Hirose; Koh Ida; Takashi Kumasaka; Masaki Yamamoto
Journal:  J Struct Funct Genomics       Date:  2006-04-28

4.  Structure of a UPF0150-family protein from Thermus thermophilus HB8.

Authors:  Nobuo Okazaki; Maki Kumei; Miho Manzoku; Seiki Kuramitsu; Mikako Shirouzu; Akeo Shinkai; Shigeyuki Yokoyama
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-02-23

5.  Crystallization and preliminary crystallographic studies of L30e, a ribosomal protein from Methanocaldococcus jannaschii (MJ1044).

Authors:  Sarani Rangarajan; Jeyaraman Jeyakanthan; Palappetty Mridula; Keiko Sakamoto; Yoshiaki Kitamura; Yoshihiro Agari; Akeo Shinkai; Akio Ebihara; Seiki Kuramitsu; Shigeyuki Yokoyama; Kanagaraj Sekar
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-01-31

6.  High-throughput crystallization-to-structure pipeline at RIKEN SPring-8 Center.

Authors:  Michihiro Sugahara; Yukuhiko Asada; Katsumi Shimizu; Hitoshi Yamamoto; Neratur K Lokanath; Hisashi Mizutani; Bagautdin Bagautdinov; Yoshinori Matsuura; Midori Taketa; Yuichi Kageyama; Naoko Ono; Yuko Morikawa; Yukiko Tanaka; Hiroki Shimada; Takanobu Nakamoto; Mitsuaki Sugahara; Masaki Yamamoto; Naoki Kunishima
Journal:  J Struct Funct Genomics       Date:  2008-08-02

7.  New structural insights and molecular-modelling studies of 4-methyl-5-beta-hydroxyethylthiazole kinase from Pyrococcus horikoshii OT3 (PhThiK).

Authors:  Jeyaraman Jeyakanthan; Subbiah Thamotharan; Devadasan Velmurugan; Vaijayanthimala Surya Narayna Rao; Shanthi Nagarajan; Akeo Shinkai; Seiki Kuramitsu; Shigeyuki Yokoyama
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-09-18

8.  JBluIce-EPICS control system for macromolecular crystallography.

Authors:  Sergey Stepanov; Oleg Makarov; Mark Hilgart; Sudhir Babu Pothineni; Alex Urakhchin; Satish Devarapalli; Derek Yoder; Michael Becker; Craig Ogata; Ruslan Sanishvili; Nagarajan Venugopalan; Janet L Smith; Robert F Fischetti
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-02-15

9.  Crystallization and preliminary X-ray diffraction analysis of membrane-bound respiratory [NiFe] hydrogenase from Hydrogenovibrio marinus.

Authors:  Yasuhito Shomura; Keisuke Hagiya; Ki-Seok Yoon; Hirofumi Nishihara; Yoshiki Higuchi
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-06-30

10.  Crystallization and preliminary X-ray analysis of NADH:rubredoxin oxidoreductase from Clostridium acetobutylicum.

Authors:  Koji Nishikawa; Yasuhito Shomura; Shinji Kawasaki; Youichi Niimura; Yoshiki Higuchi
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-12-25
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