Literature DB >> 18259060

Crystallization and preliminary crystallographic studies of L30e, a ribosomal protein from Methanocaldococcus jannaschii (MJ1044).

Sarani Rangarajan1, Jeyaraman Jeyakanthan, Palappetty Mridula, Keiko Sakamoto, Yoshiaki Kitamura, Yoshihiro Agari, Akeo Shinkai, Akio Ebihara, Seiki Kuramitsu, Shigeyuki Yokoyama, Kanagaraj Sekar.   

Abstract

In view of the biological significance of understanding the ribosomal machinery of both prokaryotes and eukaryotes, the L30e ribosomal protein from Methanocaldococcus jannaschii was cloned, overexpressed, purified and crystallized using the microbatch-under-oil method with the crystallization conditions 40% PEG 400, 0.1 M MES pH 6.0 and 5% PEG 3000 at 291 K. A diffraction-quality crystal (0.20 x 0.20 x 0.35 mm) was obtained that belonged to the primitive tetragonal space group P4(3), with unit-cell parameters a = 46.1, b = 46.1, c = 98.5 A, and diffracted to a resolution of 1.9 A. Preliminary calculations reveal that the asymmetric unit contains two monomers with a Matthews coefficient (V(M)) of 2.16 A(3) Da(-1).

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Year:  2008        PMID: 18259060      PMCID: PMC2374168          DOI: 10.1107/S1744309108000341

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  17 in total

1.  Structure of the 30S ribosomal subunit.

Authors:  B T Wimberly; D E Brodersen; W M Clemons; R J Morgan-Warren; A P Carter; C Vonrhein; T Hartsch; V Ramakrishnan
Journal:  Nature       Date:  2000-09-21       Impact factor: 49.962

2.  Inherent protein structural flexibility at the RNA-binding interface of L30e.

Authors:  Jeffrey A Chao; G S Prasad; Susan A White; C David Stout; James R Williamson
Journal:  J Mol Biol       Date:  2003-02-28       Impact factor: 5.469

3.  Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale.

Authors:  Odile Lecompte; Raymond Ripp; Jean-Claude Thierry; Dino Moras; Olivier Poch
Journal:  Nucleic Acids Res       Date:  2002-12-15       Impact factor: 16.971

4.  Free R value: a novel statistical quantity for assessing the accuracy of crystal structures.

Authors:  A T Brünger
Journal:  Nature       Date:  1992-01-30       Impact factor: 49.962

5.  Crystal structure of ribosomal protein L30e from the extreme thermophile Thermococcus celer: thermal stability and RNA binding.

Authors:  Yu Wai Chen; Mark Bycroft; Kam-Bo Wong
Journal:  Biochemistry       Date:  2003-03-18       Impact factor: 3.162

6.  Crystal structure of a prokaryotic ribosomal protein.

Authors:  K S Wilson; K Appelt; J Badger; I Tanaka; S W White
Journal:  Proc Natl Acad Sci U S A       Date:  1986-10       Impact factor: 11.205

7.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

8.  Pre-steady-state kinetics of Escherichia coli aspartate aminotransferase catalyzed reactions and thermodynamic aspects of its substrate specificity.

Authors:  S Kuramitsu; K Hiromi; H Hayashi; Y Morino; H Kagamiyama
Journal:  Biochemistry       Date:  1990-06-12       Impact factor: 3.162

9.  Multiple functions of an evolutionarily conserved RNA binding domain.

Authors:  J Vilardell; S J Yu; J R Warner
Journal:  Mol Cell       Date:  2000-04       Impact factor: 17.970

10.  Solution structure and thermal stability of ribosomal protein L30e from hyperthermophilic archaeon Thermococcus celer.

Authors:  Kam-Bo Wong; Chi-Fung Lee; Siu-Hong Chan; Tak-Yuen Leung; Yu Wai Chen; Mark Bycroft
Journal:  Protein Sci       Date:  2003-07       Impact factor: 6.725

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