Literature DB >> 17329807

Structure of a UPF0150-family protein from Thermus thermophilus HB8.

Nobuo Okazaki1, Maki Kumei, Miho Manzoku, Seiki Kuramitsu, Mikako Shirouzu, Akeo Shinkai, Shigeyuki Yokoyama.   

Abstract

TTHA0281 is a hypothetical protein from Thermus thermophilus HB8 that belongs to an uncharacterized protein family, UPF0150, in the Pfam database and to COG1598 in the National Center for Biotechnology Information Database of Clusters of Orthologous Groups. The X-ray crystal structure of the protein was determined by a multiple-wavelength anomalous dispersion technique and was refined at 1.9 A resolution to a final R factor of 18.5%. The TTHA0281 monomer adopts an alpha-beta-beta-beta-alpha fold and forms a homotetramer. Based on the properties and functions of structural homologues of the TTHA0281 monomer, the TTHA0281 protein is speculated to be involved in RNA metabolism, including RNA binding and cleavage.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 17329807      PMCID: PMC2330186          DOI: 10.1107/S1744309107006070

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  25 in total

Review 1.  Structural genomics projects in Japan.

Authors:  S Yokoyama; Y Matsuo; H Hirota; T Kigawa; M Shirouzu; Y Kuroda; H Kurumizaka; S Kawaguchi; Y Ito; T Shibata; M Kainosho; Y Nishimura; Y Inoue; S Kuramitsu
Journal:  Prog Biophys Mol Biol       Date:  2000       Impact factor: 3.667

2.  Structure of the Escherichia coli ribosomal termination complex with release factor 2.

Authors:  Bruno P Klaholz; Tillmann Pape; Andrey V Zavialov; Alexander G Myasnikov; Elena V Orlova; Bente Vestergaard; Måns Ehrenberg; Marin van Heel
Journal:  Nature       Date:  2003-01-02       Impact factor: 49.962

3.  RIKEN structural genomics beamlines at the SPring-8; high throughput protein crystallography with automated beamline operation.

Authors:  Go Ueno; Hiroyuki Kanda; Raita Hirose; Koh Ida; Takashi Kumasaka; Masaki Yamamoto
Journal:  J Struct Funct Genomics       Date:  2006-04-28

4.  Molecular basis of double-stranded RNA-protein interactions: structure of a dsRNA-binding domain complexed with dsRNA.

Authors:  J M Ryter; S C Schultz
Journal:  EMBO J       Date:  1998-12-15       Impact factor: 11.598

5.  Structural genomics projects in Japan.

Authors:  S Yokoyama; H Hirota; T Kigawa; T Yabuki; M Shirouzu; T Terada; Y Ito; Y Matsuo; Y Kuroda; Y Nishimura; Y Kyogoku; K Miki; R Masui; S Kuramitsu
Journal:  Nat Struct Biol       Date:  2000-11

6.  Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features.

Authors:  W Kabsch; C Sander
Journal:  Biopolymers       Date:  1983-12       Impact factor: 2.505

7.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04

8.  Map-likelihood phasing.

Authors:  T C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-11-21

9.  NMR solution structure of a dsRNA binding domain from Drosophila staufen protein reveals homology to the N-terminal domain of ribosomal protein S5.

Authors:  M Bycroft; S Grünert; A G Murzin; M Proctor; D St Johnston
Journal:  EMBO J       Date:  1995-07-17       Impact factor: 11.598

10.  The COG database: an updated version includes eukaryotes.

Authors:  Roman L Tatusov; Natalie D Fedorova; John D Jackson; Aviva R Jacobs; Boris Kiryutin; Eugene V Koonin; Dmitri M Krylov; Raja Mazumder; Sergei L Mekhedov; Anastasia N Nikolskaya; B Sridhar Rao; Sergei Smirnov; Alexander V Sverdlov; Sona Vasudevan; Yuri I Wolf; Jodie J Yin; Darren A Natale
Journal:  BMC Bioinformatics       Date:  2003-09-11       Impact factor: 3.169

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.