Literature DB >> 20057062

Crystallization and preliminary X-ray analysis of NADH:rubredoxin oxidoreductase from Clostridium acetobutylicum.

Koji Nishikawa1, Yasuhito Shomura, Shinji Kawasaki, Youichi Niimura, Yoshiki Higuchi.   

Abstract

NADH:rubredoxin oxidoreductase (NROR), an O(2)-inducible protein, is a versatile electron donor for scavengers of O(2) and reactive oxygen species (ROS) in Clostridium acetobutylicum. Recombinant NROR was overexpressed in Escherichia coli and purified to homogeneity; it was subsequently crystallized using the sitting-drop vapour-diffusion method at 293 K. Preliminary crystallographic analysis revealed that the crystals belonged to space group P4(1)22 or P4(3)22, with unit-cell parameters a = b = 98.6, c = 88.3 A, and diffracted to 2.1 A resolution. Assuming that the crystals contained one molecule per asymmetric unit, the Matthews coefficient was calculated to be 2.7 A(3) Da(-1) and the solvent content to be 54.1%.

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Year:  2009        PMID: 20057062      PMCID: PMC2805528          DOI: 10.1107/S1744309109047162

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  16 in total

1.  Refinement of macromolecular structures by the maximum-likelihood method.

Authors:  G N Murshudov; A A Vagin; E J Dodson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1997-05-01

2.  Likelihood-enhanced fast rotation functions.

Authors:  Laurent C Storoni; Airlie J McCoy; Randy J Read
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-02-25

3.  Identification of the gene encoding NADH-rubredoxin oxidoreductase in Clostridium acetobutylicum.

Authors:  E Guedon; H Petitdemange
Journal:  Biochem Biophys Res Commun       Date:  2001-07-13       Impact factor: 3.575

4.  RIKEN structural genomics beamlines at the SPring-8; high throughput protein crystallography with automated beamline operation.

Authors:  Go Ueno; Hiroyuki Kanda; Raita Hirose; Koh Ida; Takashi Kumasaka; Masaki Yamamoto
Journal:  J Struct Funct Genomics       Date:  2006-04-28

5.  Oxygen and the growth and metabolism of Clostridium acetobutylicum.

Authors:  R W O'Brien; J G Morris
Journal:  J Gen Microbiol       Date:  1971-11

6.  Isolation and properties of reduced nicotinamide adenine dinucleotiderubredoxin oxidoreductase of Clostridium acetobutylicum.

Authors:  H Petitdemange; R Marczak; H Blusson; R Gay
Journal:  Biochem Biophys Res Commun       Date:  1979-12-28       Impact factor: 3.575

7.  Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum.

Authors:  J Nölling; G Breton; M V Omelchenko; K S Makarova; Q Zeng; R Gibson; H M Lee; J Dubois; D Qiu; J Hitti; Y I Wolf; R L Tatusov; F Sabathe; L Doucette-Stamm; P Soucaille; M J Daly; G N Bennett; E V Koonin; D R Smith
Journal:  J Bacteriol       Date:  2001-08       Impact factor: 3.490

8.  Purification and characterization of an H2O-forming NADH oxidase from Clostridium aminovalericum: existence of an oxygen-detoxifying enzyme in an obligate anaerobic bacteria.

Authors:  Shinji Kawasaki; Jun Ishikura; Daisuke Chiba; Tomoko Nishino; Youichi Niimura
Journal:  Arch Microbiol       Date:  2004-03-11       Impact factor: 2.552

9.  O2 and reactive oxygen species detoxification complex, composed of O2-responsive NADH:rubredoxin oxidoreductase-flavoprotein A2-desulfoferrodoxin operon enzymes, rubperoxin, and rubredoxin, in Clostridium acetobutylicum.

Authors:  Shinji Kawasaki; Yu Sakai; Tohru Takahashi; Ippei Suzuki; Youichi Niimura
Journal:  Appl Environ Microbiol       Date:  2009-01-05       Impact factor: 4.792

10.  Pathway for H2O2 and O2 detoxification in Clostridium acetobutylicum.

Authors:  Oliver Riebe; Ralf-Jörg Fischer; David A Wampler; Donald M Kurtz; Hubert Bahl
Journal:  Microbiology (Reading)       Date:  2009-01       Impact factor: 2.777

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