Literature DB >> 21795805

Crystallization and preliminary X-ray diffraction analysis of membrane-bound respiratory [NiFe] hydrogenase from Hydrogenovibrio marinus.

Yasuhito Shomura1, Keisuke Hagiya, Ki-Seok Yoon, Hirofumi Nishihara, Yoshiki Higuchi.   

Abstract

Membrane-bound respiratory [NiFe] hydrogenase is an H2-uptake enzyme found in the periplasmic space of bacteria that plays a crucial role in energy-conservation processes. The heterodimeric unit of the enzyme from Hydrogenovibrio marinus was purified to homogeneity using chromatographic procedures. Crystals were grown using the sitting-drop vapour-diffusion method at room temperature. Preliminary crystallographic analysis revealed that the crystals belonged to space group P2(1), with unit-cell parameters a=75.72, b=116.59, c=113.40 Å, β=91.3°, indicating that two heterodimers were present in the asymmetric unit.

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Year:  2011        PMID: 21795805      PMCID: PMC3144807          DOI: 10.1107/S1744309111019804

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  21 in total

1.  Gas access to the active site of Ni-Fe hydrogenases probed by X-ray crystallography and molecular dynamics.

Authors:  Y Montet; P Amara; A Volbeda; X Vernede; E C Hatchikian; M J Field; M Frey; J C Fontecilla-Camps
Journal:  Nat Struct Biol       Date:  1997-07

2.  Biological activation of hydrogen.

Authors:  R P Happe; W Roseboom; A J Pierik; S P Albracht; K A Bagley
Journal:  Nature       Date:  1997-01-09       Impact factor: 49.962

3.  Crystal structure of the nickel-iron hydrogenase from Desulfovibrio gigas.

Authors:  A Volbeda; M H Charon; C Piras; E C Hatchikian; M Frey; J C Fontecilla-Camps
Journal:  Nature       Date:  1995-02-16       Impact factor: 49.962

4.  [NiFe] hydrogenase from Desulfovibrio desulfuricans ATCC 27774: gene sequencing, three-dimensional structure determination and refinement at 1.8 A and modelling studies of its interaction with the tetrahaem cytochrome c3.

Authors:  P M Matias; C M Soares; L M Saraiva; R Coelho; J Morais; J Le Gall; M A Carrondo
Journal:  J Biol Inorg Chem       Date:  2001-01       Impact factor: 3.358

5.  Unusual ligand structure in Ni-Fe active center and an additional Mg site in hydrogenase revealed by high resolution X-ray structure analysis.

Authors:  Y Higuchi; T Yagi; N Yasuoka
Journal:  Structure       Date:  1997-12-15       Impact factor: 5.006

6.  Removal of the bridging ligand atom at the Ni-Fe active site of [NiFe] hydrogenase upon reduction with H2, as revealed by X-ray structure analysis at 1.4 A resolution.

Authors:  Y Higuchi; H Ogata; K Miki; N Yasuoka; T Yagi
Journal:  Structure       Date:  1999-05       Impact factor: 5.006

7.  Characterization of an extremely thermophilic and oxygen-stable membrane-bound hydrogenase from a marine hydrogen-oxidizing bacterium Hydrogenovibrio marinus.

Authors:  H Nishihara; Y Miyashita; K Aoyama; T Kodama; Y Igarashi; Y Takamura
Journal:  Biochem Biophys Res Commun       Date:  1997-03-27       Impact factor: 3.575

8.  Liberation of hydrogen sulfide during the catalytic action of Desulfovibrio hydrogenase under the atmosphere of hydrogen.

Authors:  Y Higuchi; T Yagi
Journal:  Biochem Biophys Res Commun       Date:  1999-02-16       Impact factor: 3.575

9.  Characterization of the menaquinone reduction site in the diheme cytochrome b membrane anchor of Wolinella succinogenes NiFe-hydrogenase.

Authors:  Roland Gross; René Pisa; Monica Sänger; C Roy D Lancaster; Jörg Simon
Journal:  J Biol Chem       Date:  2003-10-22       Impact factor: 5.157

10.  [NiFe] hydrogenases: structural and spectroscopic studies of the reaction mechanism.

Authors:  Hideaki Ogata; Wolfgang Lubitz; Yoshiki Higuchi
Journal:  Dalton Trans       Date:  2009-07-02       Impact factor: 4.390

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  2 in total

1.  Structural basis for a [4Fe-3S] cluster in the oxygen-tolerant membrane-bound [NiFe]-hydrogenase.

Authors:  Yasuhito Shomura; Ki-Seok Yoon; Hirofumi Nishihara; Yoshiki Higuchi
Journal:  Nature       Date:  2011-10-16       Impact factor: 49.962

2.  Modeling three-dimensional structure of two closely related Ni-Fe hydrogenases.

Authors:  A V Abdullatypov; A A Tsygankov
Journal:  Photosynth Res       Date:  2015-01-09       Impact factor: 3.573

  2 in total

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